CX046465

Overview
NameCX046465
Unique NameCX046465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10009 contig Csv1_Contig10009:1038..1894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046465 vs. ExPASy Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 414.461 bits (1064), Expect = 3.917e-115
Identity = 200/218 (91.74%), Postives = 208/218 (95.41%), Query Frame = -2
Query:  203 YDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEA 856
            YD RVRELLDFSIYLDISNEVKFAWKIQRDM ERGHSLESIKASIEARKPDFDA+IDPQKQYADAVIEVLPTQLIPDDNEGKVLRV+LIMKEG+K+F+PVYLFDEGSTI WIPCGRKLTCSYPGIKFSYGPD YFG EVS+LEMDG+FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII  +A  P EA
Sbjct:  184 YDERVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAFIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGIKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAERAGVPAEA 401          
BLAST of CX046465 vs. ExPASy Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 1.489e-114
Identity = 201/220 (91.36%), Postives = 210/220 (95.45%), Query Frame = -2
Query:  197 YDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEAKA 856
            +D RVR+LLDFSIYLDISNEVKFAWKIQRDM ERGHSLESIKASIEARKPDFDA+IDPQKQYADAVIEVLPT LIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTI WIPCGRKLTCSYPGIKF+Y PD+YF HEVS+LEMDG+FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQ+I +KA A  EAKA
Sbjct:  176 FDERVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAFIDPQKQYADAVIEVLPTTLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFNYEPDSYFDHEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLIANKATARAEAKA 395          
BLAST of CX046465 vs. ExPASy Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 3.104e-112
Identity = 196/218 (89.91%), Postives = 207/218 (94.95%), Query Frame = -2
Query:  203 YDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEA 856
            +D+RVR+LLDFSIYLDISNEVKFAWKIQRDM ERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIP DNEGKVLRVRLI KEGV+YFSPVYLFDEGS+I WIPCGRKLTCSYPGIKF YGPD YFG+EV++LEMDG+FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH DFPGSNNGTGLFQTIVGLKIRDL+EQ+I SK AAP  A
Sbjct:  177 FDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPGDNEGKVLRVRLIQKEGVQYFSPVYLFDEGSSITWIPCGRKLTCSYPGIKFFYGPDTYFGNEVTVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQTIVGLKIRDLFEQLIASKTAAPAAA 394          
BLAST of CX046465 vs. ExPASy Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 3.551e-108
Identity = 185/218 (84.86%), Postives = 205/218 (94.04%), Query Frame = -2
Query:  203 YDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEA 856
            YDARVRELLDFSIYLDISNEVKFAWKIQRDM ERGHSLESIKASIE+RKPDFDAYIDPQKQ+AD VIEVLPT+LIPDD+EGKVLRVR+I KEGVK+F+PVYLFDEGSTI WIPCGRKLTCSYPGIKFSYGPD ++G+EV+++EMDG FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH +FPGSNNGTG FQTI+GLKIRDL+EQ++ S++ A   A
Sbjct:  182 YDARVRELLDFSIYLDISNEVKFAWKIQRDMKERGHSLESIKASIESRKPDFDAYIDPQKQHADVVIEVLPTELIPDDDEGKVLRVRMIQKEGVKFFNPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTFYGNEVTVVEMDGMFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQTIIGLKIRDLFEQLVASRSTATATA 399          
BLAST of CX046465 vs. ExPASy Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.711e-94
Identity = 166/216 (76.85%), Postives = 191/216 (88.43%), Query Frame = -2
Query:  209 YDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPV 856
            YD RV ELLDF IYLDIS+++KFAWKIQRDM ERGHSLESIK+SI ARKPDFDAYIDPQK+ AD +I+VLPTQL+PDD +G+ LRVRLIMKEG K F PVYLFDEGSTI WIPCGRKLTCS+PGIK  YGPD ++G EVS+LEMDG+FD+L+ELIYVESHLSN S KFYGE+TQQMLK++ FPGSNNGTGLFQTIVGLK+R++YE+I+  K   PV
Sbjct:  162 YDKRVAELLDFKIYLDISDDIKFAWKIQRDMAERGHSLESIKSSIAARKPDFDAYIDPQKKDADMIIQVLPTQLVPDD-KGQYLRVRLIMKEGSKMFDPVYLFDEGSTISWIPCGRKLTCSFPGIKMFYGPDTWYGQEVSVLEMDGQFDKLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQTIVGLKVREVYERIV-KKDVVPV 375          
BLAST of CX046465 vs. ExPASy Swiss-Prot
Match: KPPR_SYNY3 (Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.517e-85
Identity = 146/215 (67.91%), Postives = 181/215 (84.19%), Query Frame = -2
Query:  212 YDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAP 856
            YD RVREL+DF +YLDIS EVK  WKIQRDM ERGH+ E I ASI ARKPDF AYI+PQKQYAD VI+VLPT+LI +D E K+LRVRL+ KEGVK+F P YLFDEGSTI+W PCGRKLTC+YPGIK  YGPD + G+EVS+LE+DG+F+ L+E++YVE+HLS   TK+YGE+T+ +LKH D+PG++NGTGLFQ +VGLK+R +YEQ +T++A  P
Sbjct:  117 YDERVRELVDFGVYLDISEEVKINWKIQRDMAERGHTYEDILASINARKPDFTAYIEPQKQYADVVIQVLPTRLI-EDKESKLLRVRLVQKEGVKFFEPAYLFDEGSTIDWRPCGRKLTCTYPGIKMYYGPDNFMGNEVSLLEVDGRFENLEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVLVGLKMRKVYEQ-LTAEAKVP 329          
The following BLAST results are available for this feature:
BLAST of CX046465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
KPPR_WHEAT3.917e-11591.74Phosphoribulokinase, chloroplastic OS=Triticum aes... [more]
KPPR_ARATH1.489e-11491.36Phosphoribulokinase, chloroplastic OS=Arabidopsis ... [more]
KPPR_MESCR3.104e-11289.91Phosphoribulokinase, chloroplastic OS=Mesembryanth... [more]
KPPR_SPIOL3.551e-10884.86Phosphoribulokinase, chloroplastic OS=Spinacia ole... [more]
KPPR_CHLRE1.711e-9476.85Phosphoribulokinase, chloroplastic OS=Chlamydomona... [more]
KPPR_SYNY35.517e-8567.91Phosphoribulokinase OS=Synechocystis sp. (strain P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_8B09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8B09-C18-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046465 ID=CX046465; Name=CX046465; organism=Citrus sinensis; type=EST; length=857bp
TTTGCATTTTTATATTGAGTTATTAACAAAGTGTTCATAGATTACAACAT
GAAATAAATACATACATAGGAGTATCTTAAGAGGAAAATGCTGGCCTAGC
ACTCAACTGAAACAAGAAAAGGGACTCGGAAAAGAATAGATGGATTTTTG
GCAACTTATCTGTGTTGCCTTGTTTAATATTACAAGGCAGTGTTTAAGCT
TTCGCTTCTACCGGAGCCGCAGCCTTGCTGGTGATGATTTGTTCGTAGAG
ATCCCTAATCTTTAATCCAACTATAGTTTGGAAGAGACCGGTTCCGTTGT
TGCTGCCAGGGAAATCGGCATGCTTCAACATTTGCTGGGTGACTTCTCCA
TAGAACTTGGTTGATAAGTTGCTTAGATGGCTTTCGACATAAATTAGCTC
ATCTAACCTGTCAAATTTCCCATCCATTTCCAAAATCGAGACCTCATGGC
CAAAGTAAGCGTCAGGGCCATAAGAGAATTTGATGCCGGGGTAAGAACAT
GTAAGCTTCCTTCCGCAAGGTATCCATTCGATAGTTGATCCTTCATCAAA
CAGATAAACCGGGCTGAAGTACTTCACTCCTTCTTTCATGATCAACCTAA
CTCTCAAAACCTTTCCTTCATTATCATCCGGAATCAACTGGGTTGGTAAC
ACTTCAATCACTGCATCAGCATATTGCTTTTGTGGATCAATATAGGCATC
AAAATCTGGCTTTCGGGCTTCAATACTAGCCTTGATGCTCTCAAGACTGT
GTCCTCGCTCTGTCATGTCTCTCTGAATTTTCCATGCAAATTTAACCTCA
TTGCTAATGTCCAAATAGATACTAAAGTCCAAGAGCTCTCTCACCCGAGC
ATCATAC
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