DN618220

Overview
NameDN618220
Unique NameDN618220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618220 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  382 VLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 663
            VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT    G
Sbjct:  161 VLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253          
BLAST of DN618220 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = -3
Query:  382 VLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 663
            VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SYNT    G
Sbjct:  161 VLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253          
BLAST of DN618220 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = -3
Query:  397 TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 681
            +R+ VI L C H +H+ C +E    + Y CP C K++ +++ ++   D EI   PMP  Y      I CNDC    + ++H L  KC +C SYNT
Sbjct:  281 SRERVIFLSCSHPLHQRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374          
The following BLAST results are available for this feature:
BLAST of DN618220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_HUMAN3.141e-2351.06RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE5.357e-2351.06RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO2.256e-1336.84Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02E09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618220 ID=DN618220; Name=DN618220; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTAAACAAGAAAAACATTACTTATTTGCAAAGTGAGTAAGAAGT
TCATCCCAGCACCAGTATGAGCTAGTTGCTATGACTATTTACATCAGTTG
CCTTGAGGAAACATACAACAAAGAACAAATGAAATGAAAAACAAGAAGAC
AGAAAACAACACCATGAGCAGATTCAAACACCACGAGCTAGACTAGAAAC
ACCACGAGGAAGACTAACTGCTCCCCACAGAGCAAGTTGTAGATGCAGCC
ACTACCCCATAATGAGTAACGACTGTGGCTGAGATGGTTGAAAAGATTAA
TTAAGACCCGAACCCATCCACATCAAACAGAGAGTTCCCATCACCATCAC
CATCATTGCTAACAATACTGCCACTTGCTCAGCCCCTGGTCAAGCGAGTG
TTGTAGGACTTGCAGTTTGGGCACTTCTGAGCCAGCACATGGAACTGGAC
ATTAGAGGTCTTACCACAGTCATTGCAAAGGATCCAAACCTTTTTATTTA
GGTAAGCTTCTGGCATTGGAGTAGCCGCTATCTCCCTGTCATATTTCTCC
CATACTTTGGACATGTCACAGACTGACTTGGAGCAGATAGGACAGGCATA
TTGATGATGTTCCCGCATCTCCTTCAAGCAATTTTTGTGAATGGTATGCC
CACACGGCAAGACAATTACATCCTGTCTTGTCT
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