CX046423
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_SCHPO (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe GN=tfg2 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17 Identity = 68/246 (27.64%), Postives = 117/246 (47.56%), Query Frame = 3 Query: 87 DDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK----VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK----KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRG 797 ++ + + G+LD + VWL+K P + W N D+ + V +++D +Q ++ S ++ + PK Y+L + FV S VF ES A+ G V H+ ++ P ++Y R+ ++R + R++Q+ID+ G + P G + S S+ + +P +K +R R EL DI+FK FE W LK L + P +LKE+L+ + + NKRG Sbjct: 11 EEDDRYEDDAGDLDLGQIGSRVWLVKIPKFLMDKW-NSIPEDDAANLGCV-----RVKNDEIQLLLQN---SPENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECNVSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLLAP-----GTLGSRSRSTTSFIRNVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRG 240
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_DROME (General transcription factor IIF subunit 2 OS=Drosophila melanogaster GN=TfIIFbeta PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16 Identity = 63/249 (25.30%), Postives = 116/249 (46.59%), Query Frame = 3 Query: 120 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818 +LD + A R VWL+K P +A+ W+ ++ D S + +L+LDP + + ++ + V+ +L + + K+ S N+ K+ MEG++ K + +P N Y +L E K+ R++Q ID + P + +++KKA E K+ R D+ + D++F FE+ + +K LV+ T+ P +LKEIL ++C YN + ++ +E Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALDPEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNE-KLYMEGRIVQKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDK---IVQNFKPVKDHAHNIEYRERKKA------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWE 251
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_HUMAN (General transcription factor IIF subunit 2 OS=Homo sapiens GN=GTF2F2 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15 Identity = 69/244 (28.28%), Postives = 121/244 (49.59%), Query Frame = 3 Query: 111 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818 G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E A +D +P S S FV ++VF+ES+ K+++EG V + + +P E Y RL R + +S R Q +D + +P+ +N + + + K+ + KR R D+ + D++F FE+ + LK LV T P +LKEIL E+ V N +G ++ T+E Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_BOVIN (General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15 Identity = 68/244 (27.87%), Postives = 122/244 (50.00%), Query Frame = 3 Query: 111 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818 G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E A +D +P S S FV ++VF+ES+ K+++EG V + + +P E Y RL R + +S R Q +D + +P+ +N + + + K+ + KR R D+ + D++F FE+ + LK LV T P +LK+IL E+ V N +G ++ T+E Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAN--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTWE 234
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_MOUSE (General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15 Identity = 67/244 (27.46%), Postives = 122/244 (50.00%), Query Frame = 3 Query: 111 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818 G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E A +D +P S S FV ++VF+ES+ K+++EG V + + +P E Y +L R + +S R Q +D + +P+ +N + + + K+ + KR R D+ + D++F FE+ + LK LV T P +LKEIL E+ + N +G ++ T+E Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKNQGRTE-VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_DICDI (General transcription factor IIF subunit 2 OS=Dictyostelium discoideum GN=gtf2f2 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15 Identity = 68/245 (27.76%), Postives = 106/245 (43.27%), Query Frame = 3 Query: 117 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQ-----------PVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818 G ++T AD VWL+K P +++SWQ + Q K+ LS P +F + TTA + D+ P+ +FSE G +A+EG + + D+K ++ +Y L + R K K R QVID +S+ +KK K T+ K+ + E+ D++F F + + LK L T+ P LK IL ++C+ NKRG YE Sbjct: 11 GEVNTDNADNQVWLIKVPKFLSESWQKIGQGEIGQIHIKGGDNYRYKYIKISLSYGP--DVGQEFQLITTANTLDNQ---------------PLKIFSEDKDGALALEGNIGLRCDIKIDVES-PQYRDLMKSRHTKYNTKTRMTQVIDESELFTPTLFDANKVKVSTVGITQKK----KSTD-KKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKTILEKVCILNKRGPYHHLYE 232
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_RAT (General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15 Identity = 67/244 (27.46%), Postives = 121/244 (49.59%), Query Frame = 3 Query: 111 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818 G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E A +D +P S S FV ++VF+ES+ K+++EG V + + +P E Y +L R + +S R Q D + +P+ +N + + + K+ + KR R D+ + D++F FE+ + LK LV T P +LKEIL E+ + N +G ++ T+E Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPV--------ANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_XENLA (General transcription factor IIF subunit 2 OS=Xenopus laevis GN=gtf2f2 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14 Identity = 67/259 (25.87%), Postives = 126/259 (48.65%), Query Frame = 3 Query: 114 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV---------PMSVFSESNQG------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818 KG LD AK + +WL+K P +A+ W A + V K+ + + +++ + FT+ E A D +P S ++ ++ ++V +ES G K+A+EG V H+ + +P + Y ++ R++ +S RQ Q ++ + +P+ SN + + + K+ + KR R D+ ++ D++F FE+ + +K LV T P +LKEIL ++ +YN +GT++ T+E Sbjct: 5 KGELDLNGAKQNTGMWLVKLPKYLAQQW---AKATGRGEVGKLRIVKNQGKTE-VSFTLNEELASIQDIGGKPASSLVSTPREHPFLLQSVGGQTLTVLTESLSGQSEDKSENRVIDKLALEGIVVHRAECRPAAS--DNYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPV--------SNHQYNIEYEKKKKDDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTHKNTWE 249 The following BLAST results are available for this feature:
BLAST of CX046423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046423 ID=CX046423; Name=CX046423; organism=Citrus sinensis; type=EST; length=820bpback to top |