CX046423

Overview
NameCX046423
Unique NameCX046423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2490 contig Csv1_Contig2490:79..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_SCHPO (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe GN=tfg2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 68/246 (27.64%), Postives = 117/246 (47.56%), Query Frame = 3
Query:   87 DDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK----VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK----KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRG 797
            ++   + +  G+LD  +    VWL+K P  +   W N     D+  +  V      +++D +Q  ++    S ++ + PK Y+L +   FV  S VF ES         A+ G V H+ ++ P     ++Y R+ ++R   +    R++Q+ID+  G  + P     G + S S+      +  +P     +K +R  R EL DI+FK FE    W LK L +    P  +LKE+L+ + + NKRG
Sbjct:   11 EEDDRYEDDAGDLDLGQIGSRVWLVKIPKFLMDKW-NSIPEDDAANLGCV-----RVKNDEIQLLLQN---SPENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECNVSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLLAP-----GTLGSRSRSTTSFIRNVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRG 240          
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_DROME (General transcription factor IIF subunit 2 OS=Drosophila melanogaster GN=TfIIFbeta PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 63/249 (25.30%), Postives = 116/249 (46.59%), Query Frame = 3
Query:  120 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818
            +LD + A R VWL+K P  +A+ W+   ++ D                S  +   +L+LDP +    +  ++ + V+  +L      + +  K+    S     N+ K+ MEG++  K + +P   N   Y +L  E   K+    R++Q ID    +     P      +   +++KKA      E K+ R D+  + D++F  FE+   + +K LV+ T+ P  +LKEIL ++C YN +  ++  +E
Sbjct:   15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALDPEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNE-KLYMEGRIVQKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDK---IVQNFKPVKDHAHNIEYRERKKA------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWE 251          
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_HUMAN (General transcription factor IIF subunit 2 OS=Homo sapiens GN=GTF2F2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 69/244 (28.28%), Postives = 121/244 (49.59%), Query Frame = 3
Query:  111 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818
            G+ +L  AK +  VWL+K P  +++ W   A +     V K+ ++    +++ + FT+ E  A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P     E Y RL R +  +S    R  Q +D     + +P+        +N +   + +  K+ + KR R D+  + D++F  FE+   + LK LV  T  P  +LKEIL E+ V N +G ++ T+E
Sbjct:    5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234          
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_BOVIN (General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 68/244 (27.87%), Postives = 122/244 (50.00%), Query Frame = 3
Query:  111 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818
            G+ +L  AK +  VWL+K P  +++ W   A +     V K+ ++ +  +++ + FT+ E  A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P     E Y RL R +  +S    R  Q +D     + +P+        +N +   + +  K+ + KR R D+  + D++F  FE+   + LK LV  T  P  +LK+IL E+ V N +G ++ T+E
Sbjct:    5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAN--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTWE 234          
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_MOUSE (General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 67/244 (27.46%), Postives = 122/244 (50.00%), Query Frame = 3
Query:  111 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818
            G+ +L  AK +  VWL+K P  +++ W   A +     V K+ ++ +  +++ + FT+ E  A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P     E Y +L R +  +S    R  Q +D     + +P+        +N +   + +  K+ + KR R D+  + D++F  FE+   + LK LV  T  P  +LKEIL E+ + N +G ++ T+E
Sbjct:    5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKNQGRTE-VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234          
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_DICDI (General transcription factor IIF subunit 2 OS=Dictyostelium discoideum GN=gtf2f2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 68/245 (27.76%), Postives = 106/245 (43.27%), Query Frame = 3
Query:  117 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQ-----------PVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818
            G ++T  AD  VWL+K P  +++SWQ     +  Q              K+ LS  P      +F + TTA + D+                P+ +FSE   G +A+EG +  + D+K   ++  +Y  L + R  K   K R  QVID                +S+    +KK    K T+ K+ +    E+ D++F  F  + +  LK L   T+ P   LK IL ++C+ NKRG     YE
Sbjct:   11 GEVNTDNADNQVWLIKVPKFLSESWQKIGQGEIGQIHIKGGDNYRYKYIKISLSYGP--DVGQEFQLITTANTLDNQ---------------PLKIFSEDKDGALALEGNIGLRCDIKIDVES-PQYRDLMKSRHTKYNTKTRMTQVIDESELFTPTLFDANKVKVSTVGITQKK----KSTD-KKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKTILEKVCILNKRGPYHHLYE 232          
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_RAT (General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 67/244 (27.46%), Postives = 121/244 (49.59%), Query Frame = 3
Query:  111 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818
            G+ +L  AK +  VWL+K P  +++ W   A +     V K+ ++ +  +++ + FT+ E  A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P     E Y +L R +  +S    R  Q  D     + +P+        +N +   + +  K+ + KR R D+  + D++F  FE+   + LK LV  T  P  +LKEIL E+ + N +G ++ T+E
Sbjct:    5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPV--------ANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234          
BLAST of CX046423 vs. ExPASy Swiss-Prot
Match: T2FB_XENLA (General transcription factor IIF subunit 2 OS=Xenopus laevis GN=gtf2f2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 67/259 (25.87%), Postives = 126/259 (48.65%), Query Frame = 3
Query:  114 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV---------PMSVFSESNQG------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDXPAQFLKEILNELCVYNKRGTNQGTYE 818
            KG LD   AK +  +WL+K P  +A+ W   A +     V K+ +  +  +++ + FT+ E  A   D   +P S  ++  ++            ++V +ES  G            K+A+EG V H+ + +P     + Y ++ R++  +S    RQ Q ++     + +P+        SN +   + +  K+ + KR R D+ ++ D++F  FE+   + +K LV  T  P  +LKEIL ++ +YN +GT++ T+E
Sbjct:    5 KGELDLNGAKQNTGMWLVKLPKYLAQQW---AKATGRGEVGKLRIVKNQGKTE-VSFTLNEELASIQDIGGKPASSLVSTPREHPFLLQSVGGQTLTVLTESLSGQSEDKSENRVIDKLALEGIVVHRAECRPAAS--DNYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPV--------SNHQYNIEYEKKKKDDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTHKNTWE 249          
The following BLAST results are available for this feature:
BLAST of CX046423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
T2FB_SCHPO2.062e-1727.64Transcription initiation factor IIF subunit beta O... [more]
T2FB_DROME1.745e-1625.30General transcription factor IIF subunit 2 OS=Dros... [more]
T2FB_HUMAN1.478e-1528.28General transcription factor IIF subunit 2 OS=Homo... [more]
T2FB_BOVIN1.478e-1527.87General transcription factor IIF subunit 2 OS=Bos ... [more]
T2FB_MOUSE2.520e-1527.46General transcription factor IIF subunit 2 OS=Mus ... [more]
T2FB_DICDI3.292e-1527.76General transcription factor IIF subunit 2 OS=Dict... [more]
T2FB_RAT7.333e-1527.46General transcription factor IIF subunit 2 OS=Ratt... [more]
T2FB_XENLA4.753e-1425.87General transcription factor IIF subunit 2 OS=Xeno... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_7H04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7H04-O7-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046423 ID=CX046423; Name=CX046423; organism=Citrus sinensis; type=EST; length=820bp
CACCGATAGATAGAAGTAAGAAGCTGGAAAGCCACTCAAAGGCAGAGCCA
GAGAAGAAGGAAAAAGGAAAGACTAAAGAGATGGAGGATGATCAAAGTAA
CCACGGAAACGGCAAGGGTAATTTGGATACTGCAAAAGCCGATAGATCGG
TTTGGTTAATGAAGTGCCCATTAGTGGTGGCTAAGTCATGGCAAAATCAA
GCTTCTTCTCAAGATTCTCAGCCTGTAGCCAAAGTCATTCTCTCTCTTGA
TCCTCTTCAATCCGACAGCATGCAGTTTACTATGGAGACGACGGCGGTCA
GCAATGATAGTCTGAACAGGCCGAAAAGCTATTCATTGAATATGTTCAAA
GACTTTGTTCCAATGTCTGTTTTCTCTGAGTCAAATCAAGGTAAAGTTGC
GATGGAAGGGAAGGTGGAACATAAGTTTGACATGAAGCCTCATGAGAAAA
ACATGGAGGAATATGGCAGATTGTGTCGTGAAAGGACAAATAAATCTATG
ATCAAGAATAGACAAATACAGGTTATTGATAATGACCACGGAGTGCATAT
GAGGCCCATGCCTGGGATGGTTGGGTTAATTTCATCTAACTCTAAGGATA
AGAAGAAAGCACAACCAGTTAAACAGACAGAAGTGAAAAGAACCAGAAGG
GATCGTGGGGAATTGGAGGATATAATGTTCAAGCTATTTGAAAGGCAACC
AAATTGGGCCTTAAAGCAGCTAGTCCAAGAGACTGATNCACCCGCGCAAT
TTTTGAAAGAGATACTGAACGAGCTCTGTGTCTACAACAAGAGAGGAACC
AACCAAGGAACTTATGAGCT
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