CX046384

Overview
NameCX046384
Unique NameCX046384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046384 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.387e-54
Identity = 101/140 (72.14%), Postives = 115/140 (82.14%), Query Frame = -2
Query:  425 KRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGN 844
            KRK RNF+KKIRYTVRKEVALRMQRNKGQFTSAKSNN+++ASA SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP GPRTLCNACGLMWANKG  RDLSKA+PQ  Q   LNKNE+       Q++  V N
Sbjct:  157 KRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQIMITVAN 296          
BLAST of CX046384 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.339e-51
Identity = 100/145 (68.97%), Postives = 117/145 (80.69%), Query Frame = -2
Query:  413 KRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKA-APQAGQTSSLNKNEENGTLKAEQVIRAVGNINGS 844
            KRK RNF+K IRYTVRKEVALRMQR KGQFTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GPRTLCNACGLMWANKGTLRDLSK   PQ  Q  SLNKNE+   L+A+Q++   G+I+ +
Sbjct:  153 KRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKVPPPQTPQHLSLNKNED-ANLEADQMMEVTGDISNT 296          
BLAST of CX046384 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 9.977e-31
Identity = 77/142 (54.23%), Postives = 93/142 (65.49%), Query Frame = -2
Query:  419 KRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGNIN 844
            KR  R FEKK+RY VR+EVALRM RNKGQFTS+K  +     A +S G++Q  A D     + +I C HCGIS K TPMMRRGP GPRTLCNACGL WAN+GTLRDLSK   +     +L K ++ G+     V  A  N+N
Sbjct:  156 KRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTD----GAYNS-GTDQDSAQD---DAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEE--NQLALMKPDDGGS-----VADAANNLN 282          
The following BLAST results are available for this feature:
BLAST of CX046384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT25_ARATH8.387e-5472.14GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT27_ARATH1.339e-5168.97GATA transcription factor 27 OS=Arabidopsis thalia... [more]
GAT26_ARATH9.977e-3154.23GATA transcription factor 26 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_7F08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7F08-K15-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046384 ID=CX046384; Name=CX046384; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTATCCTCTAATCACTGGTAAGAATGAACAATAATGC
ACAACAAAGCCTCTGTTTTGTCTTGGCAGCTTCCAAGTTCAAAACAACAA
TTTCTCTAAATAAAAACATGTCTCTTAAAAAAATTTTAAATAAAAAGAAC
ACTCCCTACCAAGACAAATTTTACAGATAAAATTATTCCATTCAAACCAA
GTACAAGCAGCGATGGATTATTGGAACCTGCGGAATGATGCAACTTTCCG
CGATGTCCATCCATCAAGATACCTGGTTGGCCATTAACGGATAAGCTGCT
GATACCCATGTTAGCATATAAAACTTACTTGCCCTGCTGTGCAACCAACA
CTATTGCTCCTCGCCTCACTCAAGTTTGACATGGAGCCCCAGCCAAATAT
GGCTTATCATGTGGAGCCGTTAATATTTCCCACAGCTCTAATGACTTGCT
CAGCTTTTAAAGTTCCATTCTCCTCATTCTTGTTTAAGGAAGAAGTCTGT
CCAGCTTGGGGTGCTGCCTTGGAGAGATCCCTCAAAGTTCCCTTGTTTGC
CCACATAAGTCCGCAGGCATTGCAAAGGGTCCTTGGTCCTTCAGGTCCAC
GTCGCATCATTGGTGTTGACTTCTCACTGATACCGCAGTGCCGGCAAACA
ATGTCTTGATTTTGGGATCCATTAACATCCCCAGCCCAGCTCTGGTTTGA
CCCCCAACTCGAAATTGCTGATGCAGAATCCTCATTATTGGACTTTGCAG
AAGTAAACTGACCTTTGTTTCGCTGCATCCGAAGTGCTACTTCTTTACGG
ACGGTATAACGAATTTTCTTCTCAAAATTGCGTTCTTTTCGCTTT
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