CX046358

Overview
NameCX046358
Unique NameCX046358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3772 contig Csv1_Contig3772:1..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046358 vs. ExPASy Swiss-Prot
Match: BH113_ARATH (Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.605e-26
Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 2
Query:  488 DQGSLPTLTSKRHKADLSIS-AKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL--QSMPAAKV-----QELEQYSLRNRGLCLVPISCTAGVARSNGADIWAPI---KTTSP 853
            DQ   P    KR++   S+  AK RKE+LGERI ALQQLVSPYGKTD ASVL EAM YI+FL +Q++VL +PYL   S+    V       ++   LR+RGLCLVP+S T  V  SNGAD W+P     TTSP
Sbjct:  132 DQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGADFWSPATMGHTTSP 264          
BLAST of CX046358 vs. ExPASy Swiss-Prot
Match: BH123_ARATH (Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 2
Query:  515 SKRHKADLSIS--AKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL---------QSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGADIWAP 835
            +KR K++ +    A +RKEK+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV  LS PY+         QS  + +++  E+  LR+RGLCLVP+S T  V      D W P
Sbjct:  330 AKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447          
BLAST of CX046358 vs. ExPASy Swiss-Prot
Match: BH112_ARATH (Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.671e-22
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  551 KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQ-----------ELEQYSLRNRGLCLVPISCTAGVARSNGADIWAP 835
            K RKE L ++I +LQQLVSP+GKTDTASVL EA+EYI+FLH+QV VLS PY++   + + Q           E E + LR  GLCLVPIS T  VA    AD W P
Sbjct:  280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385          
BLAST of CX046358 vs. ExPASy Swiss-Prot
Match: BH133_ARATH (Transcription factor bHLH133 OS=Arabidopsis thaliana GN=BHLH133 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.384e-19
Identity = 60/137 (43.80%), Postives = 70/137 (51.09%), Query Frame = 2
Query:  551 KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQS------------------MPAAKVQELEQY------------------------SLRNRGLCLVPISCTAGVARSNGADIWAP 835
            K RKEKLG RI +L QLVSP+GKTDTASVL EA+ YI+FLH Q++ LS PY  +                   P    Q + +Y                         LR+RGLCLVPISCT  V   NGAD WAP
Sbjct:  219 KVRKEKLGGRIASLHQLVSPFGKTDTASVLSEAIGYIRFLHSQIEALSLPYFGTPSRNNMMHQHAQRNMNGIFPEDPGQLVNEYCMKRGVSLSSTDNQKSNPNEEPMKDLRSRGLCLVPISCTLQVGSDNGADYWAP 355          
BLAST of CX046358 vs. ExPASy Swiss-Prot
Match: BH110_ARATH (Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.260e-19
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  551 KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQS------------MPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNG 817
            K RKEKLG+RI ALQQLVSP+GKTDTASVL EA+ YI+FL  Q++ LS PY+++              + +  E E   LR+RGLCLVP+SC   V    G
Sbjct:  332 KVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVPYMRASRNRPGKASQLVSQSQEGDEEETRDLRSRGLCLVPLSCMTYVTGDGG 432          
BLAST of CX046358 vs. ExPASy Swiss-Prot
Match: BH068_ARATH (Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.870e-19
Identity = 58/137 (42.34%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  551 KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQ------------------------------------------ELEQYSLRNRGLCLVPISCTAGVARSNGADIWAP 835
            K RKEKLG RI AL QLVSP+GKTDTASVL EA+ YI+FL  Q++ LS PY  +  +  ++                                          E  +  LR+RGLCLVPISCT  V   NGAD WAP
Sbjct:  263 KVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGSDNGADYWAP 399          
BLAST of CX046358 vs. ExPASy Swiss-Prot
Match: BH103_ARATH (Transcription factor bHLH103 OS=Arabidopsis thaliana GN=BHLH103 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.924e-17
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  545 SAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQV--KVLSAPYLQSMPAAKVQELEQYS--------------LRNRGLCLVPISCT 793
            S K RKEKLG+RI ALQQLVSP+GKTDTASVL +A++YI+FL EQ+  KV ++P+L S+ + + ++    S              LR+RGLCL+PIS T
Sbjct:  188 SFKVRKEKLGDRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTSPHLNSIGSGEQKQWSDKSSNNTHNQNCSPRQDLRSRGLCLMPISST 286          
BLAST of CX046358 vs. ExPASy Swiss-Prot
Match: BH114_ARATH (Transcription factor bHLH114 OS=Arabidopsis thaliana GN=BHLH114 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.097e-16
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  545 SAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQ------------ELEQ--------YSLRNRGLCLVPISCTAGVA 805
            S K RKEKLG+RI ALQQLVSP+GKTDTASVL EA+EYI+FL EQV VLS P   ++ + + Q            E+E+          L +RGLCL+PIS +  VA
Sbjct:  171 SFKVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQVTVLSNPEQNTIGSVQQQQCSNKKSINTQGEVEEDECSPRRYVDLSSRGLCLMPISASYPVA 277          
BLAST of CX046358 vs. ExPASy Swiss-Prot
Match: BH111_ARATH (Transcription factor bHLH111 OS=Arabidopsis thaliana GN=BHLH111 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.444e-16
Identity = 50/104 (48.08%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  560 KEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAA-----------KVQELEQYSLRNRGLCLVPISCTAGVARSNGA-DIWAP 835
            K KL ++I  LQQ+VSP+GKTDTASVL EA+ YI F  EQVK+LS PY+++                 +  +   LR+RGLCLVPIS T    R N A D W P
Sbjct:  208 KAKLRDKITTLQQIVSPFGKTDTASVLQEAITYINFYQEQVKLLSTPYMKNSSMKDPWGGWDREDHNKRGPKHLDLRSRGLCLVPISYTPIAYRDNSATDYWNP 311          
The following BLAST results are available for this feature:
BLAST of CX046358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
BH113_ARATH2.605e-2653.38Transcription factor bHLH113 OS=Arabidopsis thalia... [more]
BH123_ARATH1.747e-2250.00Transcription factor bHLH123 OS=Arabidopsis thalia... [more]
BH112_ARATH8.671e-2253.77Transcription factor bHLH112 OS=Arabidopsis thalia... [more]
BH133_ARATH1.384e-1943.80Transcription factor bHLH133 OS=Arabidopsis thalia... [more]
BH110_ARATH5.260e-1951.49Transcription factor bHLH110 OS=Arabidopsis thalia... [more]
BH068_ARATH6.870e-1942.34Transcription factor bHLH68 OS=Arabidopsis thalian... [more]
BH103_ARATH4.924e-1751.52Transcription factor bHLH103 OS=Arabidopsis thalia... [more]
BH114_ARATH1.097e-1651.40Transcription factor bHLH114 OS=Arabidopsis thalia... [more]
BH111_ARATH5.444e-1648.08Transcription factor bHLH111 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_7E04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7E04-I7-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046358 ID=CX046358; Name=CX046358; organism=Citrus sinensis; type=EST; length=856bp
TTCACACGCCCTTCTCTTCTCCCCTTTCTGCAACTTGACAACCCATTTAT
GGCTTCTCTTTTTTAACCCTTTTGATGCTCAAATTTCAACTGGGTTTCGG
TGATTTTAGTGAACTCTTTTGAAGTTTTGATTAAAGGGTTTAATTTTGTC
GTAAAGTTTTCAACTTTTTGAGACGCAAAAACTGACAAATTTAAGCAGAA
AGTTCCATTTTCTTGAAAGGGAAACCGTTTTTTTGTTTCCAAAGACGGAC
TTTTGGGTTCGTTGTTTTTTAAAAAAAAAACTTGGAACAAAGCCATTTAT
TTTGGCTTTCACTAAACACTTCGGTGGAAATTTGAGTGATACTTGAACTG
GGCTGTGATTGTTTTTAGCGTATAAAGCTCAGATTTTTATTGTGAGCTCT
CTTGGCAATGCTGACTCTATACTCTTGGGAGTATAAGGTATAAAGGTGTC
GAAGATGATGGAAAATAAAAGAAGTCCTTGTGCTGTTGACCAAGGCAGTC
TCCCTACTCTTACATCCAAGCGACACAAAGCTGATCTGTCCATCTCCGCC
AAGGAGAGGAAAGAGAAGCTTGGTGAACGAATCATTGCTCTGCAACAGCT
TGTTTCACCATATGGAAAGACGGATACTGCATCTGTCCTTTGGGAGGCGA
TGGAGTACATACAATTTCTACATGAACAAGTGAAGGTGTTGAGTGCTCCA
TACCTCCAAAGCATGCCAGCAGCTAAGGTGCAGGAATTAGAGCAGTATAG
CCTGAGAAACCGAGGTTTATGTCTCGTTCCAATTTCCTGTACTGCTGGAG
TTGCTCGGAGCAATGGTGCTGACATTTGGGCACCCATCAAGACCACTTCA
CCTAAA
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