CX046329

Overview
NameCX046329
Unique NameCX046329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3763 contig Csv1_Contig3763:3..217. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.690e-20
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1
Query:   55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            MD+Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILT
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILT 53          
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.542e-19
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1
Query:   55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RFIMRNVKGPVREGD+LT
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLT 52          
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.337e-19
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1
Query:   55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGDILT
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILT 52          
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.216e-14
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LT
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLT 57          
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.216e-14
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LT
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLT 57          
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_DROME (40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.165e-14
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1
Query:   55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            MD  +  A V+KV+GRTGS+GQ TQV+V+FL +QNR I+RNVKGPVREGDILT
Sbjct:    1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILT 53          
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.596e-13
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LT
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57          
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.596e-13
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LT
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57          
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_MOUSE (40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.596e-13
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LT
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57          
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_HUMAN (40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.596e-13
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LT
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57          
The following BLAST results are available for this feature:
BLAST of CX046329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS28_MAIZE6.690e-2090.5740S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=... [more]
RS282_ARATH2.542e-1990.5740S ribosomal protein S28-2 OS=Arabidopsis thalian... [more]
RS281_ARATH4.337e-1990.5740S ribosomal protein S28-1 OS=Arabidopsis thalian... [more]
RS28_ICTPU3.216e-1475.5140S ribosomal protein S28 OS=Ictalurus punctatus G... [more]
RS28_DANRE3.216e-1475.5140S ribosomal protein S28 OS=Danio rerio GN=rps28 ... [more]
RS28_DROME7.165e-1469.8140S ribosomal protein S28 OS=Drosophila melanogast... [more]
RS28_RAT1.596e-1373.4740S ribosomal protein S28 OS=Rattus norvegicus GN=... [more]
RS28_PIG1.596e-1373.4740S ribosomal protein S28 OS=Sus scrofa GN=RPS28 P... [more]
RS28_MOUSE1.596e-1373.4740S ribosomal protein S28 OS=Mus musculus GN=Rps28... [more]
RS28_HUMAN1.596e-1373.4740S ribosomal protein S28 OS=Homo sapiens GN=RPS28... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_7C07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7C07-E13-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046329 ID=CX046329; Name=CX046329; organism=Citrus sinensis; type=EST; length=215bp
GAAATTAGCAGCCGCTTCTGTCACCTTCTCTCTCTTCTCGCCTCTTCGCT
CAGAATGGATTCTCAGATTAAGCACGCTGTGGTGGTGAAAGTCATGGGCC
GCACTGGTTCAAGAGGACAGGTTACTCAAGTGAGAGTCAAGTTTTTAGAT
GATCAGAACCGATTCATCATGAGGAATGTGAAGGGACCCGTTAGAGAAGG
TGATATCCTCACTTT
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