CX046328

Overview
NameCX046328
Unique NameCX046328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3763 contig Csv1_Contig3763:4..218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.299e-20
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = -3
Query:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162
            MD+Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTL
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTL 54          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.738e-20
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = -3
Query:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162
            MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RFIMRNVKGPVREGD+LTL
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTL 53          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.490e-19
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = -3
Query:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162
            MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGDILTL
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTL 53          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.105e-14
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:    1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTL
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTL 58          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.105e-14
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:    1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTL
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTL 58          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_DROME (40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.462e-14
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162
            MD  +  A V+KV+GRTGS+GQ TQV+V+FL +QNR I+RNVKGPVREGDILTL
Sbjct:    1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILTL 54          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:    1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTL 58          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:    1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTL 58          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_MOUSE (40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:    1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTL 58          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_HUMAN (40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:    1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTL 58          
The following BLAST results are available for this feature:
BLAST of CX046328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS28_MAIZE2.299e-2090.7440S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=... [more]
RS282_ARATH8.738e-2090.7440S ribosomal protein S28-2 OS=Arabidopsis thalian... [more]
RS281_ARATH1.490e-1990.7440S ribosomal protein S28-1 OS=Arabidopsis thalian... [more]
RS28_ICTPU1.105e-1476.0040S ribosomal protein S28 OS=Ictalurus punctatus G... [more]
RS28_DANRE1.105e-1476.0040S ribosomal protein S28 OS=Danio rerio GN=rps28 ... [more]
RS28_DROME2.462e-1470.3740S ribosomal protein S28 OS=Drosophila melanogast... [more]
RS28_RAT5.486e-1474.0040S ribosomal protein S28 OS=Rattus norvegicus GN=... [more]
RS28_PIG5.486e-1474.0040S ribosomal protein S28 OS=Sus scrofa GN=RPS28 P... [more]
RS28_MOUSE5.486e-1474.0040S ribosomal protein S28 OS=Mus musculus GN=Rps28... [more]
RS28_HUMAN5.486e-1474.0040S ribosomal protein S28 OS=Homo sapiens GN=RPS28... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_7C07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7C07-E13-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046328 ID=CX046328; Name=CX046328; organism=Citrus sinensis; type=EST; length=215bp
CAAAGTGAGGATATCACCTTCTCTAACGGGTCCCTTCACATTCCTCATGA
TGAATCGGTTCTGATCATCTAAAAACTTGACTCTCACTTGAGTAACCTGT
CCTCTTGAACCAGTGCGGCCCATGACTTTCACCACCACAGCGTGCTTAAT
CTGAGAATCCATTCTGAGCGAAGAGGCGAGAAGAGAGAGAAGGTGACAGA
AGCGGCTGCTAATTT
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