CX046328
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.299e-20 Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = -3 Query: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162 MD+Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTL Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTL 54
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.738e-20 Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = -3 Query: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF D +RFIMRNVKGPVREGD+LTL Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTL 53
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.490e-19 Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = -3 Query: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF D +R+IMRNVKGPVREGDILTL Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTL 53
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.105e-14 Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = -3 Query: 1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150 IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTL Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTL 58
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.105e-14 Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = -3 Query: 1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150 IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTL Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTL 58
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_DROME (40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b PE=3 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 2.462e-14 Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = -3 Query: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162 MD + A V+KV+GRTGS+GQ TQV+V+FL +QNR I+RNVKGPVREGDILTL Sbjct: 1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILTL 54
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14 Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -3 Query: 1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTL 58
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14 Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -3 Query: 1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTL 58
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_MOUSE (40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14 Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -3 Query: 1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTL 58
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_HUMAN (40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14 Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -3 Query: 1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTL 58 The following BLAST results are available for this feature:
BLAST of CX046328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046328 ID=CX046328; Name=CX046328; organism=Citrus sinensis; type=EST; length=215bpback to top |