CX046300

Overview
NameCX046300
Unique NameCX046300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046300_ssr413 microsatellite CX046300_ssr413:413..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX046300 vs. ExPASy Swiss-Prot
Match: EIN3_ARATH (Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.342e-21
Identity = 75/203 (36.95%), Postives = 100/203 (49.26%), Query Frame = -3 
Query:  301 FHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDISGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNT--LQPRAQHQQEYYHGQGAVMDGNLFE--------GSNMHENNHLMFTREENQFDRFKI-------MXXXXXXXXXXXXXXXSLMFES-PFDLGSFDYKEDFQAAG-VDTM-----PKHDTSVWF 837
            FHVNEVKPVV    F Q +P     NSV    D++G+ VPEDGQKMISELMS+YD N+Q N+       ++V E Q+   LQP   + QE+    G +++G+ FE         +N   NN   F    N  + FK                         L+F+S PFD+ SFDY++D    G V TM      + D S+WF
Sbjct:  440 FHVNEVKPVV---GFPQPRPV----NSVAQPIDLTGI-VPEDGQKMISELMSMYDRNVQSNQ------TSMVMENQSVSLLQPTVHNHQEHLQFPGNMVEGSFFEDLNIPNRANNNNSSNNQTFFQGNNNNNNVFKFDTADHNNFEAAHNNNNNSSGNRFQLVFDSTPFDMASFDYRDDMSMPGVVGTMDGMQQKQQDVSIWF 628
The following BLAST results are available for this feature:
BLAST of CX046300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIN3_ARATH9.342e-2136.95Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_7B05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7B05-C9-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046300 ID=CX046300; Name=CX046300; organism=Citrus sinensis; type=EST; length=839bp
TTTTTTTTTTCAACTGAACATTAATATATTTTCAAATCAAAATTACACTA
ACTTATTTATTTGACATTTCACTTCATACACATAATTTAGCAGTAACAGC
ATCAGGCATATTCTATGGGAATTTTACCACCTTTCTTATTAGCCCATCTC
ACAACCTGCTTCGCTTCTAATTTCTACAGCTAAAAGAAAAATACAACTAA
CAGCTTTTTAACATAATTAAAGTTTTACCACATCATAAGCCAATACCGAA
GCCATAAAATATGCCCAGAGGATGAGGATGAGAAGCTGGTATTGTTTTTA
GAACCAGACTGAGGTATCATGCTTCGGCATGGTATCCACTCCTGCTGCTT
GAAAATCCTCTTTATAATCAAAGGATCCTAAGTCGAATGGAGACTCAAAC
ATCAAGCTAAAATTGTTGTTGTTGCCGCTGCTGTTGTTCTCGAATGGAGA
ATTCATAATCTTAAACCGATCAAATTGATTTTCCTCTCGTGTGAACATCA
GATGATTGTTCTCGTGCATGTTGGATCCTTCGAACAAGTTCCCATCCATT
ACAGCTCCTTGACCATGGTAATACTCCTGCTGATGCTGAGCTCTTGGCTG
AAGAGTATTTTGACCTTCTGTCACAACGGCATTGTTACCGGGATTCACAT
TCCTGTTTCCTTGGATATTGTTATCATAGATCGACATGAGCTCACTAATC
ATTTTTTGACCGTCTTCTGGAACTCCAAGTCCTGATATATCAAAGGAAGG
TTGCACAGAATTAAACGTTGGACCTGCTGGCTTGGACTGAGCAAATGTTT
GAGGGAAAACAACTGGTTTCACTTCATTAACATGAAAAT
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