CX046291

Overview
NameCX046291
Unique NameCX046291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046291_ssr508 microsatellite CX046291_ssr508:508..522. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX046291 vs. ExPASy Swiss-Prot
Match: WOX8_ORYSJ (WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.216e-45
Identity = 50/63 (79.37%), Postives = 58/63 (92.06%), Query Frame = 1
Query:  295 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARFQKEAVSV 483
            WTPTP+QLQILE+IFDQG GTPSKQKIK+IT ELSQHGQISETNVYNWFQNRRAR +++  ++
Sbjct:   93 WTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAAL 155          

HSP 2 Score: 91.2781 bits (225), Expect = 4.216e-45
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 3
Query:   99 MTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISA 284
            MTDEQ+E LRKQI++YATICEQLVEMH++L+A QD + AG RLGN+YCDPLM   GGHKI+A
Sbjct:   30 MTDEQMEVLRKQISIYATICEQLVEMHRALTAQQD-SIAGMRLGNLYCDPLMVP-GGHKITA 89          
BLAST of CX046291 vs. ExPASy Swiss-Prot
Match: WOX13_ARATH (WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana GN=WOX13 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 8.411e-43
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1
Query:  295 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARFQKE 471
            WTPTPVQLQILE IFDQGTGTPSKQKIK+IT ELSQHGQI+E NVYNWFQNRRAR +++
Sbjct:  100 WTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRK 158          

HSP 2 Score: 85.8853 bits (211), Expect = 8.411e-43
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   99 MTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISA 284
            MTDEQ ETLRKQIA+Y TICE+LVEMHK+L+A QDL  AGGR+G +Y DP+M+S  GHK++A
Sbjct:   38 MTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDL--AGGRMGGLYADPMMSS-LGHKMTA 96          
BLAST of CX046291 vs. ExPASy Swiss-Prot
Match: WOX14_ARATH (WUSCHEL-related homeobox 14 OS=Arabidopsis thaliana GN=WOX14 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.411e-32
Identity = 41/59 (69.49%), Postives = 54/59 (91.53%), Query Frame = 1
Query:  295 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARFQKE 471
            WTPT  QLQILESI+D+G+GTP++++I+EI  ELS+HGQI+ETNVYNWFQNRRAR +++
Sbjct:   96 WTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRK 154          

HSP 2 Score: 63.1586 bits (152), Expect = 1.411e-32
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 3
Query:   99 MTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKIS 281
            MT+EQ+E LRKQIAVYA IC+QLV +H SLS++  L++    +   Y DP+  S   H+IS
Sbjct:   31 MTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSSGVRPMVGGYFDPMGASSSSHRIS 91          
BLAST of CX046291 vs. ExPASy Swiss-Prot
Match: WOX10_ARATH (Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana GN=WOX10 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.639e-30
Identity = 39/59 (66.10%), Postives = 52/59 (88.14%), Query Frame = 1
Query:  295 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARFQKE 471
            WTPT  QLQILE+I+ +G+GTP+ ++IKEIT+ELS+HGQI E NVY+WFQNRRAR +++
Sbjct:   80 WTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRK 138          

HSP 2 Score: 62.7734 bits (151), Expect = 1.639e-30
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 3
Query:   99 MTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKIS 281
            MTDEQ+ETLRKQIA+YA +C+QLV +H SLS+   L++    +   Y DP++ S   H +S
Sbjct:   15 MTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLSSGMNPMRGEYFDPMVASSSAHGMS 75          
BLAST of CX046291 vs. ExPASy Swiss-Prot
Match: WOX8_ARATH (WUSCHEL-related homeobox 8 OS=Arabidopsis thaliana GN=WOX8 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 1
Query:  295 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 459
            W P P Q++ILESIF+ GT  P +++I+ I + L ++GQI + NV+ WFQNR++R
Sbjct:   56 WNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSR 110          
BLAST of CX046291 vs. ExPASy Swiss-Prot
Match: WOX1_ARATH (WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana GN=WOX1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  295 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 459
            W PTP QL++LE ++ QGT TPS   I++IT +L ++G+I   NV+ WFQN +AR
Sbjct:   77 WNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKAR 131          
The following BLAST results are available for this feature:
BLAST of CX046291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
WOX8_ORYSJ4.216e-4579.37WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. ... [more]
WOX13_ARATH8.411e-4384.75WUSCHEL-related homeobox 13 OS=Arabidopsis thalian... [more]
WOX14_ARATH1.411e-3269.49WUSCHEL-related homeobox 14 OS=Arabidopsis thalian... [more]
WOX10_ARATH1.639e-3066.10Putative WUSCHEL-related homeobox 10 OS=Arabidopsi... [more]
WOX8_ARATH5.466e-1149.09WUSCHEL-related homeobox 8 OS=Arabidopsis thaliana... [more]
WOX1_ARATH9.324e-1150.91WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_7A10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7A10-A19-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046291 ID=CX046291; Name=CX046291; organism=Citrus sinensis; type=EST; length=641bp
CGCAGCAGGAGACCCAAACCCAGAACCAGAACCAGAACCAGAGAGGAGGA
GAGAATGATAATAATAACGTTGTAAATGGAGTAATGTATGTGAAAGTGAT
GACTGATGAGCAACTCGAGACTTTGAGGAAGCAGATTGCTGTCTATGCTA
CTATTTGCGAGCAACTTGTTGAGATGCATAAATCACTCTCTGCCCACCAA
GATCTTGCAGCAGCAGGAGGGCGGCTGGGGAATATATACTGTGACCCATT
AATGACATCTGGTGGTGGGCACAAGATCAGTGCCTTTTTTTATGTGGACT
CCAACTCCAGTTCAGCTTCAAATTCTGGAGAGCATTTTTGATCAAGGGAC
TGGGACTCCAAGCAAGCAAAAGATCAAAGAGATTACAGTTGAACTCAGTC
AGCACGGCCAAATCTCCGAAACTAATGTCTACAATTGGTTCCAAAATAGG
CGTGCTCGATTCCAAAAGGAAGCAGTTAGTGTCTTCTTCTGCCAATACTC
TTCATAATGGTGGTGGTGGTGGTGCTGCTGGTGCTGGTGCTGATTCAGAA
GTAGAGACTGATGTTGATTCTCTGCTGCTGCATTGACGAACACAAGACCA
CTTAACCAGAGAATCTTTCTTCTGCTCATTCTACCTCTCAA
back to top