CX046189

Overview
NameCX046189
Unique NameCX046189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12506 contig Csv1_Contig12506:38..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046189 vs. ExPASy Swiss-Prot
Match: SKI23_ARATH (F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.778e-17
Identity = 72/252 (28.57%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   67 VDWTELPAELIEAISKKLKFYSDYIRFQRVCRNWRLSI-PKTPNHXXXXXXXXXXXXXXXXXXXXTHCAFFNLSANKVHLLNLPEASLRSRHCGSSHGWVIILDE----TPAILLLNPLTRVKIHLPPLSSFPNVVSFSYF---DIGREYTVASYLPAGAGDRYNCSLRQMRDSFIKKIVLSSSPVDKDYNFLAVAILNQTADLAYCRNGDQCWTLIEGMQSYSEDVIYRKGSFYAVDKAGLITVCDIAGDK 798
            VDW+ LP +L++ ISK L+   D I+F+ VC +WR +  PK+P                           F LS   + L+   E  + S     S GW+I ++E       + LL+PL   +  +P   +FP V+  S F   ++GRE+ +  +   G           +   +++K V+     D DY F+ + I + +  LA  R+ D+ WT+I  M S  +DV+   G F+AVD  G   V D +  K
Sbjct:    2 VDWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSP----LPTHHLPILPDNGGSLFPDSAVGFRLSQRSILLIKPHEPCIES----DSFGWLIKVEEDLNVPRKVTLLDPLCDTRNSIP--ENFPRVLDMSKFKVRELGREFKLHYFNTVG---------DIVESLYLEKAVVKYLDCDGDYKFVLLTI-HVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSSLK 233          
BLAST of CX046189 vs. ExPASy Swiss-Prot
Match: FB294_ARATH (Putative F-box protein At5g55150 OS=Arabidopsis thaliana GN=At5g55150 PE=4 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.346e-11
Identity = 46/154 (29.87%), Postives = 75/154 (48.70%), Query Frame = 1
Query:  343 GSSHGWVIILDETPAILLLNPLTRVKIHLPPLSSFPNVVSFSYFDIGREYTVASYLPAGAGDRYNCSLRQMRDSFIKKIVLSSSPVDKDYNFLAVAILNQTADLAYCRNGDQCWTLIEGMQSYSEDVIYRKGSFYAVDKAGLITVCDIAGDKDK 804
            G+   WV     T   LL  P+T+    LPPL SF         D+ R     + +P            +   +FIKK V S+S +D ++  + + I N    LA+CR GD+ WT +E + S  +D+++  G F+A+D+ G I  C+++ +  K
Sbjct:   85 GNQQAWVC--GSTLGFLLTKPVTKSVTSLPPLISFE--------DVQRLLQSQAIIPDS----------EALKNFIKKAVSSTSLLDDEW--VVLVIYNTDRKLAFCRRGDKQWTDLESVASSVDDIVFCNGVFFAIDRLGEIYHCELSANNPK 216          
The following BLAST results are available for this feature:
BLAST of CX046189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SKI23_ARATH4.778e-1728.57F-box protein SKIP23 OS=Arabidopsis thaliana GN=SK... [more]
FB294_ARATH1.346e-1129.87Putative F-box protein At5g55150 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_6D03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-6D03-H6-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046189 ID=CX046189; Name=CX046189; organism=Citrus sinensis; type=EST; length=840bp
CTCTCTCTCCATCAATTAGAGTTGGTTATTGCAGAATTAACAGATTAGAA
ATTGATGAAGATGGAGGTTGATTGGACCGAATTGCCCGCGGAGCTAATAG
AAGCGATCTCCAAAAAGCTCAAATTCTACAGCGATTACATCCGCTTCCAA
AGAGTGTGTCGCAATTGGCGATTATCAATTCCAAAAACCCCAAATCACCT
CCCTCCTCAGCTCCCTTGGCTGATGTTACCTCAATCGCAATCACAATCAC
AGTCACAGACACACTGCGCCTTCTTCAATCTCTCCGCCAACAAAGTCCAC
TTGCTCAACCTTCCAGAAGCTTCTCTTCGCAGTCGCCACTGTGGCTCTTC
TCACGGCTGGGTAATCATCCTCGACGAAACCCCAGCGATCCTCCTGCTGA
ATCCCTTGACACGAGTCAAAATTCACTTGCCTCCGTTGTCTTCATTTCCT
AATGTGGTTAGTTTCAGTTACTTTGACATTGGTAGGGAGTACACGGTTGC
TTCTTATTTGCCAGCAGGAGCAGGTGACCGCTACAACTGTAGTCTAAGAC
AAATGCGTGACTCTTTTATTAAGAAAATTGTTCTGTCTTCGAGCCCTGTT
GACAAAGACTATAATTTTTTGGCGGTCGCTATTCTTAATCAAACAGCTGA
TTTGGCTTACTGTAGAAATGGAGATCAGTGTTGGACTTTAATTGAAGGTA
TGCAATCTTATTCTGAAGATGTTATCTATCGTAAAGGATCATTTTACGCG
GTTGATAAGGCCGGGTTGATTACAGTATGTGATATTGCTGGTGATAAAGA
TAAACCTAGGGTTTCAATTATTCAAACCCCGCCACAGTTT
back to top