CX046180

Overview
NameCX046180
Unique NameCX046180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3233 contig Csv1_Contig3233:943..1755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046180 vs. ExPASy Swiss-Prot
Match: DECR2_ARATH (Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.811e-74
Identity = 136/188 (72.34%), Postives = 152/188 (80.85%), Query Frame = -3
Query:  251 NGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXS-ILNISATLHYTASWYQIHXXXXXXXXXAITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYMPLYKLGEKWDIAMAALYLTFDTGKYVNGTTFIVDGGLWLSRPRHLPKDAVKQLSRTVEKRSRDKPIGVPKSKL 811
            NGFRTV+DID+VGTF MCH ALKYLKK             I+NISATLHYTASWYQIH         A TRNLALEWG DYDIRVNGIAPGPIG TPGM+KL P+EI +K R+YMPLYK+GEKWDIAMAALYL+ D+GKYV+G T +VDGGLWLS+PRHLPK+AVKQLSR VEKRSR KP+G+P SKL
Sbjct:  111 NGFRTVLDIDAVGTFNMCHAALKYLKKGAPGRDSSSGGGSIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAPGPIGGTPGMSKLVPEEIENKTREYMPLYKVGEKWDIAMAALYLSCDSGKYVSGLTMVVDGGLWLSKPRHLPKEAVKQLSRAVEKRSRAKPVGLPTSKL 298          
BLAST of CX046180 vs. ExPASy Swiss-Prot
Match: DECR2_MOUSE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus musculus GN=Decr2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.967e-20
Identity = 61/168 (36.31%), Postives = 90/168 (53.57%), Query Frame = -3
Query:  311 NGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXSILNISATLHYTASWYQIHXXXXXXXXXAITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYM-PLYKLGEKWDIAMAALYLTFDTGKYVNGTTFIVDGGLWLSRPRHLPKDAVKQL 811
            N F+TV+DID++GTF +     K   +            I+NI+ATL       Q+H         A+TR+LA+EWG   +IRVN +APG I  T G+ +L     +SK + +  P+ +LG K +IA + LYL      YV+G   +VDGG W++ P     + +KQL
Sbjct:  128 NAFKTVVDIDTIGTFNVSSVLYKKFFRDHGGV-------IVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGAISGTEGLRRLRGSNASSKLKHFSNPIPRLGTKTEIAHSVLYLASPLASYVSGIVLVVDGGSWMTFP-----NGIKQL 282          
BLAST of CX046180 vs. ExPASy Swiss-Prot
Match: DECR2_PONAB (Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abelii GN=DECR2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.275e-19
Identity = 60/157 (38.22%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  344 NGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXSILNISATLHYTASWYQIHXXXXXXXXXAITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA-PDEINSKARDYMPLYKLGEKWDIAMAALYLTFDTGKYVNGTTFIVDGGLWLSRP 811
            N F+TVMDID+ GTF +     +   +            I+NI+ATL       Q+H         A+TR+LA+EWG   +IRVN +APGPI  T G+ +L  P    S      PL +LG K +IA + LYL      YV G   + DGG WL+ P
Sbjct:  128 NAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGV-------IVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLTFP 276          
BLAST of CX046180 vs. ExPASy Swiss-Prot
Match: DECR2_HUMAN (Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapiens GN=DECR2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.275e-19
Identity = 60/157 (38.22%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  344 NGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXSILNISATLHYTASWYQIHXXXXXXXXXAITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA-PDEINSKARDYMPLYKLGEKWDIAMAALYLTFDTGKYVNGTTFIVDGGLWLSRP 811
            N F+TVMDID+ GTF +     +   +            I+NI+ATL       Q+H         A+TR+LA+EWG   +IRVN +APGPI  T G+ +L  P    S      PL +LG K +IA + LYL      YV G   + DGG WL+ P
Sbjct:  128 NAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGV-------IVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLTFP 276          
BLAST of CX046180 vs. ExPASy Swiss-Prot
Match: SPS19_YEAST (Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Saccharomyces cerevisiae GN=SPS19 PE=1 SV=4)

HSP 1 Score: 96.6709 bits (239), Expect = 1.665e-19
Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = -3
Query:  356 NGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXSILNISATLHYTASWYQIHXXXXXXXXXAITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYMPLYKLGEKWDIAMAALYLTFDTGKYVNGTTFIVDGGLW 811
            N F++V+DID +G+F      LK LKK            IL +SAT HY    +Q H         A+ +NLA+E G    IR N IAPG I +T G+ +LA  +   KA   +PL +LG   DIA + +Y+      YV GT  +VDGG+W
Sbjct:  127 NAFKSVVDIDLLGSFNTAKACLKELKKSKGS--------ILFVSATFHYYGVPFQGHVGAAKAGIDALAKNLAVELGP-LGIRSNCIAPGAIDNTEGLKRLAGKKYKEKALAKIPLQRLGSTRDIAESTVYIFSPAASYVTGTVLVVDGGMW 269          
BLAST of CX046180 vs. ExPASy Swiss-Prot
Match: DECR2_RAT (Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus norvegicus GN=Decr2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.840e-19
Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = -3
Query:  335 NGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXSILNISATLHYTASWYQIHXXXXXXXXXAITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDYM--PLYKLGEKWDIAMAALYLTFDTGKYVNGTTFIVDGGLWLSRPRHL 811
            N F+TV+DID++GTF +     +   +            I+NI+ATL       Q+H         A+TR+LA+EWG   +IRVN +APG I  T G+ +L   + +SK + Y+  P+ +LG K +IA + LYL      YV+G   +VDGG W++ P  +
Sbjct:  128 NAFKTVVDIDTLGTFNVSRVLYEKFFRDHGGV-------IVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGAISGTEGLRRLGGPKASSKFK-YLSSPIPRLGTKTEIAHSVLYLASPLASYVSGIVLVVDGGSWMTLPNDI 279          
BLAST of CX046180 vs. ExPASy Swiss-Prot
Match: DECR2_DANRE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rerio GN=decr2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.079e-18
Identity = 57/155 (36.77%), Postives = 79/155 (50.97%), Query Frame = -3
Query:  350 NGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXSILNISATLHYTASWYQIHXXXXXXXXXAITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDEINSKARDY-MPLYKLGEKWDIAMAALYLTFDTGKYVNGTTFIVDGGLWLS 811
            N F+TVM+ID++GTF          K            SI+NISATL Y     Q+H         A+TR+LA+EWG    +RVN +APGPI  T G  +L      +    + +PL + G K ++A A L+L      YV G+  + DGG WL+
Sbjct:  135 NAFKTVMEIDTMGTFNTS-------KVIYDKWFKDHGGSIVNISATLGYRGQALQVHAGSAKAANDAMTRHLAVEWGPS-GVRVNTVAPGPISGTEGYRRLGGSHAETAGAFHSIPLQRAGNKTEMAHAVLFLASRASSYVTGSVLVADGGAWLT 281          
BLAST of CX046180 vs. ExPASy Swiss-Prot
Match: FADH_BACSU (Probable 2,4-dienoyl-CoA reductase OS=Bacillus subtilis GN=fadH PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 54/155 (34.84%), Postives = 78/155 (50.32%), Query Frame = -3
Query:  350 NGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXSILNISATLHYTASWYQIHXXXXXXXXXAITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAPDE-INSKARDYMPLYKLGEKWDIAMAALYLTFDTGKYVNGTTFIVDGGLWLS 811
            NG++ V++I   GTF     A ++               ILN++AT  + A    +H         ++TR LA+EWG+ Y IR N IAPGPI  T G  KL   E   ++  + +PL +LG   +IA  A +L  D   Y+NG    +DGG WL+
Sbjct:  102 NGWKAVIEIVLNGTFFCSQAAARH------WIDQKQQGVILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAPGPIERTGGAEKLFESEKAMARTMNSVPLGRLGTPEEIAALAAFLLSDEASYINGDCITMDGGQWLN 250          
The following BLAST results are available for this feature:
BLAST of CX046180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DECR2_ARATH1.811e-7472.34Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidops... [more]
DECR2_MOUSE1.967e-2036.31Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus muscu... [more]
DECR2_PONAB1.275e-1938.22Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abe... [more]
DECR2_HUMAN1.275e-1938.22Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapi... [more]
SPS19_YEAST1.665e-1938.82Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Sac... [more]
DECR2_RAT2.840e-1936.02Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus no... [more]
DECR2_DANRE1.079e-1836.77Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rer... [more]
FADH_BACSU1.010e-1634.84Probable 2,4-dienoyl-CoA reductase OS=Bacillus sub... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_6C09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-6C09-F18-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046180 ID=CX046180; Name=CX046180; organism=Citrus sinensis; type=EST; length=813bp
TTTTTTTTTTTTTTTTTGAGAAATTACATGCATTTATAGTAGCCAAATGC
AAAAAAAACTATGCAGTTATTCAATGGATGGTGTGGAGAAATATGATGAA
TAATCTACAAAGCATCTGACTGTTCTAAAAATTTAAAATGTAAACTACAG
CATCGGCAACTCCGTAAGTGATTTTATTGAGTGGTATAAGCTCGCTGCTT
AAAACCCAAATGTAAACAATTGCATGCCTGGACCCTGTTGAACTGGTTCA
AAGCTTGCTCTTTGGAACACCAATGGGTTTATCCCTAGATCTCTTCTCCA
CAGTTCGAGAAAGCTGCTTAACAGCATCTTTTGGCAAATGACGAGGCCGG
CTCAGCCAAAGTCCTCCATCGACTATAAAAGTTGTCCCATTGACATATTT
CCCTGTATCAAAAGTAAGGTACAGAGCAGCCATAGCAATATCCCATTTCT
CCCCAAGTTTGTATAACGGCATATAGTCTCGAGCTTTGCTATTAATCTCA
TCAGGTGCAAGTTTATTCATGCCCGGGGTATCACCGATGGGGCCTGGGGC
AATTCCATTGACTCGAATATCATAGTCAGCTCCCCATTCCAGTGCCAAGT
TTCTGGTAATGGCATCAACAGCTGCCTTGGCTGCAGCTACATGTATTTGG
TACCAAGAAGCTGTATAATGTAAAGTAGCACTAATGTTCAAAATGGATCC
ACCACCAGCTGAGCTTCTCCCAGGTCCACCTTTTTTAAGATATTTAAGTG
CTTCATGGCACATTGTGAATGTGCCGACAGAATCAATATCCATAACTGTT
CGAAACCCATTAG
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