CX046170
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046170 vs. ExPASy Swiss-Prot
Match: VDE_ARATH (Violaxanthin de-epoxidase, chloroplastic OS=Arabidopsis thaliana GN=VDE1 PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 6.258e-30 Identity = 64/95 (67.37%), Postives = 70/95 (73.68%), Query Frame = 2 Query: 539 NVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKXXXXXXXXXXXXXXXXISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 823 N LKE + L+ + GVLAC FL++PSA AVDALK I+NPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC Sbjct: 84 NELKELTAPLLLKLVGVLACAFLIVPSADAVDALKTCACLLKGCRIELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 178
BLAST of CX046170 vs. ExPASy Swiss-Prot
Match: VDE_SPIOL (Violaxanthin de-epoxidase, chloroplastic OS=Spinacia oleracea GN=VDE1 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 2.629e-28 Identity = 81/205 (39.51%), Postives = 107/205 (52.20%), Query Frame = 2 Query: 212 MALVASSICLYGNERIGNPCSRTGFAITEK-SQNRRMVYYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRTEKVSSISNTGTTIPEAKEVLKNLVHSVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKXXXXXXXXXXXXXXXXISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 823 MALVA SIC+ +E I C+ +K Q + ++ I+ N +K +C++ + + S L+S E SS + IP+ +LK L+++ V ++AC F V+ SA AVDALK I+NP+CAANVACLQTCNNRPDETECQIKCGDLF N VVDEFNEC Sbjct: 1 MALVARSICVSYDE-IAGICNNVSHRNFKKWVQWKNPFLFQDDARRNIRFNDRKLSCTKFIGASEKLQHSKSPKSGLISCGWEVNSSKVVSNAVIPKKWNLLK---------------LKVVEVTAIVACTFFVMSSAQAVDALKTCTCLLKECRIELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFANKVVDEFNEC 189
BLAST of CX046170 vs. ExPASy Swiss-Prot
Match: VDE_LACSA (Violaxanthin de-epoxidase, chloroplastic OS=Lactuca sativa GN=VDE1 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.305e-27 Identity = 73/164 (44.51%), Postives = 93/164 (56.71%), Query Frame = 2 Query: 335 IVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRTEKVSSISNTGTTIPEAKEVLKNLVHSVPNVL-KEWSQLQLINVAGVLACMFLVIPSAGAVDALKXXXXXXXXXXXXXXXXISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 823 I+ +KI+SN +L SY+ S S + S I + T+ E + +L + +L K+W Q I +A VL C F+++P AVDALK I+NP+CAANVACLQTCNNRPDETECQIKCGDLFENSVVD+FNEC Sbjct: 38 IIMMKIRSNNGYFNSFRLFTSYKTS-------SFSDSSHCKDKSQICSIDTSFEEIQRF--DLKRGMTLILEKQWRQF--IQLAIVLVCTFVIVPRVDAVDALKTCACLLKECRIELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFENSVVDQFNEC 190
BLAST of CX046170 vs. ExPASy Swiss-Prot
Match: VDE_TOBAC (Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum GN=VDE1 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.482e-26 Identity = 71/167 (42.51%), Postives = 85/167 (50.90%), Query Frame = 2 Query: 323 YYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRTEKVSSISNTGTTIPEAKEVLKNLVHSVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKXXXXXXXXXXXXXXXXISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 823 Y+ IV KI S+ + +S R CC + R L S +S + +P+ K V ++W Q + + + V A AVDALK ISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC Sbjct: 37 YFGSIVVAKICSS--RRIPRYFRKSPRICCGLDSRGLQLFSHGKHNLSPAHSINQNVPKGNSGCKFPKDVALMVWEKWGQFAKTAIVAIF--ILSVASKADAVDALKTCTCLLKECRLELAKCISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 199 The following BLAST results are available for this feature:
BLAST of CX046170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046170 ID=CX046170; Name=CX046170; organism=Citrus sinensis; type=EST; length=825bpback to top |