CX046170

Overview
NameCX046170
Unique NameCX046170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3762 contig Csv1_Contig3762:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046170 vs. ExPASy Swiss-Prot
Match: VDE_ARATH (Violaxanthin de-epoxidase, chloroplastic OS=Arabidopsis thaliana GN=VDE1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.258e-30
Identity = 64/95 (67.37%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  539 NVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKXXXXXXXXXXXXXXXXISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 823
            N LKE +   L+ + GVLAC FL++PSA AVDALK                I+NPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC
Sbjct:   84 NELKELTAPLLLKLVGVLACAFLIVPSADAVDALKTCACLLKGCRIELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 178          
BLAST of CX046170 vs. ExPASy Swiss-Prot
Match: VDE_SPIOL (Violaxanthin de-epoxidase, chloroplastic OS=Spinacia oleracea GN=VDE1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.629e-28
Identity = 81/205 (39.51%), Postives = 107/205 (52.20%), Query Frame = 2
Query:  212 MALVASSICLYGNERIGNPCSRTGFAITEK-SQNRRMVYYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRTEKVSSISNTGTTIPEAKEVLKNLVHSVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKXXXXXXXXXXXXXXXXISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 823
            MALVA SIC+  +E I   C+       +K  Q +    ++      I+ N +K +C++ + +           S L+S   E  SS   +   IP+   +LK               L+++ V  ++AC F V+ SA AVDALK                I+NP+CAANVACLQTCNNRPDETECQIKCGDLF N VVDEFNEC
Sbjct:    1 MALVARSICVSYDE-IAGICNNVSHRNFKKWVQWKNPFLFQDDARRNIRFNDRKLSCTKFIGASEKLQHSKSPKSGLISCGWEVNSSKVVSNAVIPKKWNLLK---------------LKVVEVTAIVACTFFVMSSAQAVDALKTCTCLLKECRIELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFANKVVDEFNEC 189          
BLAST of CX046170 vs. ExPASy Swiss-Prot
Match: VDE_LACSA (Violaxanthin de-epoxidase, chloroplastic OS=Lactuca sativa GN=VDE1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.305e-27
Identity = 73/164 (44.51%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  335 IVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRTEKVSSISNTGTTIPEAKEVLKNLVHSVPNVL-KEWSQLQLINVAGVLACMFLVIPSAGAVDALKXXXXXXXXXXXXXXXXISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 823
            I+ +KI+SN       +L  SY+         S   S   +  S I +  T+  E +    +L   +  +L K+W Q   I +A VL C F+++P   AVDALK                I+NP+CAANVACLQTCNNRPDETECQIKCGDLFENSVVD+FNEC
Sbjct:   38 IIMMKIRSNNGYFNSFRLFTSYKTS-------SFSDSSHCKDKSQICSIDTSFEEIQRF--DLKRGMTLILEKQWRQF--IQLAIVLVCTFVIVPRVDAVDALKTCACLLKECRIELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFENSVVDQFNEC 190          
BLAST of CX046170 vs. ExPASy Swiss-Prot
Match: VDE_TOBAC (Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum GN=VDE1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.482e-26
Identity = 71/167 (42.51%), Postives = 85/167 (50.90%), Query Frame = 2
Query:  323 YYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRTEKVSSISNTGTTIPEAKEVLKNLVHSVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKXXXXXXXXXXXXXXXXISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 823
            Y+  IV  KI S+  +       +S R CC +  R   L S     +S   +    +P+     K        V ++W Q     +  +   +  V   A AVDALK                ISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC
Sbjct:   37 YFGSIVVAKICSS--RRIPRYFRKSPRICCGLDSRGLQLFSHGKHNLSPAHSINQNVPKGNSGCKFPKDVALMVWEKWGQFAKTAIVAIF--ILSVASKADAVDALKTCTCLLKECRLELAKCISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNEC 199          
The following BLAST results are available for this feature:
BLAST of CX046170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VDE_ARATH6.258e-3067.37Violaxanthin de-epoxidase, chloroplastic OS=Arabid... [more]
VDE_SPIOL2.629e-2839.51Violaxanthin de-epoxidase, chloroplastic OS=Spinac... [more]
VDE_LACSA1.305e-2744.51Violaxanthin de-epoxidase, chloroplastic OS=Lactuc... [more]
VDE_TOBAC5.482e-2642.51Violaxanthin de-epoxidase, chloroplastic OS=Nicoti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_6C03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-6C03-F6-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046170 ID=CX046170; Name=CX046170; organism=Citrus sinensis; type=EST; length=825bp
CTTTTTATCTCCCTGGTTGTTCCTCATTTTCTTTCATTCTTTGTTTGAAA
AATCCAAAAGATAAAAAAACAGAGAAAACAATTTCAAGTTGACATGAAAA
GCTGCACTTCACCATTTCTTGCATTTTATTTTCTGTTACATTCACTGGCA
GTCTTTCTTCAGGTCCCCTACTACTAGCTTGCAATAAGAAGAACTCTGAC
ACTGAACTATTATGGCGTTGGTTGCAAGTTCCATATGTTTGTACGGTAAT
GAAAGGATTGGCAATCCATGTAGCAGAACAGGGTTTGCAATTACTGAAAA
GAGCCAAAACAGGAGAATGGTGTATTACCGTGGCATAGTTACACTGAAAA
TTAAGTCCAATGGCAAGAAGTCAACGTGCTCCCAGTTAATGAGATCCTAC
AGAAATTGTTGCAAGATTGGCTTAAGATGTTCAAATCTGGTGTCAGGAAG
AACAGAGAAAGTTTCTTCAATCTCTAACACTGGTACAACAATACCTGAGG
CAAAAGAGGTGCTTAAAAATCTGGTGCACTCTGTACCAAATGTGCTGAAG
GAATGGAGCCAATTACAGTTGATTAATGTAGCTGGTGTACTGGCTTGCAT
GTTTTTGGTCATTCCATCAGCTGGTGCTGTTGATGCTCTCAAGACATGTA
CTTGCTTATTGAGGGAGTGCAGGCTGGAACTTGCTGAGTGCATTTCAAAT
CCGGCATGTGCTGCCAATGTTGCTTGCCTTCAAACCTGCAACAATCGGCC
TGATGAGACTGAATGCCAGATAAAATGTGGGGACCTGTTTGAAAACAGTG
TTGTTGATGAGTTTAATGAGTGTGC
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