DN618048

Overview
NameDN618048
Unique NameDN618048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4257 contig Csv1_Contig4257:39..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618048 vs. ExPASy Swiss-Prot
Match: EIF3K_ARATH (Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.537e-51
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 3
Query:  120 SFTVEQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKH 467
            S+TVEQLVA+NP+NP+ILPDLENYVN  V SQTYSL+ NLCLLRLYQFEPERM+T IVARIL+KALMAMP PDFSLCLFLIPERVQME+QFK+LIVLSHYLETGRF+ FWDEAAK+
Sbjct:   13 SYTVEQLVALNPFNPEILPDLENYVN--VTSQTYSLEVNLCLLRLYQFEPERMNTHIVARILVKALMAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQQFWDEAAKN 126          
BLAST of DN618048 vs. ExPASy Swiss-Prot
Match: EIF3K_ORYSJ (Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.301e-50
Identity = 96/116 (82.76%), Postives = 107/116 (92.24%), Query Frame = 3
Query:  120 SFTVEQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKH 467
            S+TVE+LVAVNPYNPDIL DLE +VN+QV +QTY+LDANL LLRLYQFEPER+S QIV+RILIKALMAMP PDFSLCLFLIPE VQME+QFKTLIVLSHYLET RFR FWDEA+K+
Sbjct:    9 SYTVEELVAVNPYNPDILNDLEGFVNDQVSNQTYNLDANLSLLRLYQFEPERLSVQIVSRILIKALMAMPGPDFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKN 124          
BLAST of DN618048 vs. ExPASy Swiss-Prot
Match: EIF3K_NEMVE (Eukaryotic translation initiation factor 3 subunit K OS=Nematostella vectensis GN=v1g170558 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.925e-18
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  126 TVEQLV-AVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFW 449
            TV QL+  ++ YNP+ L  LE+YV+ QV    Y LDANL +L+LYQF P    T ++++IL+KALM +P  DF +C  +I + +Q +   K +I+L+  LET  F   W
Sbjct:    8 TVSQLLKGIDRYNPENLKVLEHYVHLQVHENAYDLDANLAVLKLYQFNPAYSQTSVISQILLKALMNLPNADFIMCRCVIDDAIQQDLTIKKVILLAERLETCAFTSAW 116          
BLAST of DN618048 vs. ExPASy Swiss-Prot
Match: EIF3K_XENTR (Eukaryotic translation initiation factor 3 subunit K OS=Xenopus tropicalis GN=eif3k PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.517e-17
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  138 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFW 449
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW
Sbjct:   15 LRGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQSFW 118          
BLAST of DN618048 vs. ExPASy Swiss-Prot
Match: EIF3K_MOUSE (Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus GN=Eif3k PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.517e-17
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  138 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFW 449
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW
Sbjct:   15 LKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFW 118          
BLAST of DN618048 vs. ExPASy Swiss-Prot
Match: EIF3K_HUMAN (Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens GN=EIF3K PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.517e-17
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  138 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFW 449
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW
Sbjct:   15 LKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFW 118          
BLAST of DN618048 vs. ExPASy Swiss-Prot
Match: EIF3K_BOVIN (Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus GN=EIF3K PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.517e-17
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  138 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFW 449
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW
Sbjct:   15 LKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFW 118          
BLAST of DN618048 vs. ExPASy Swiss-Prot
Match: EIF3K_XENLA (Eukaryotic translation initiation factor 3 subunit K OS=Xenopus laevis GN=eif3k PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.605e-16
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  138 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFW 449
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A++L+KAL  +P  DF+LC  +I +  Q +   + ++ L   LET  F+ FW
Sbjct:   15 LRGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQVLLKALTNLPHTDFTLCKCMIDQAHQEDRPIRQILYLGDLLETCHFQSFW 118          
BLAST of DN618048 vs. ExPASy Swiss-Prot
Match: EIF3K_DANRE (Eukaryotic translation initiation factor 3 subunit K OS=Danio rerio GN=eif3k PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.738e-16
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  138 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFW 449
            L  ++ YNP+ L  LE YV+ Q     Y L+ANL +L+LYQF      T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L + LET  F+ FW
Sbjct:   16 LRGIDRYNPENLATLERYVDTQARENAYDLEANLAVLKLYQFNLAYFQTTVTAQILLKALTNLPHTDFTLCKCMIDQTHQEERPIRQILYLGNLLETCHFQSFW 119          
BLAST of DN618048 vs. ExPASy Swiss-Prot
Match: EIF3K_DROSE (Eukaryotic translation initiation factor 3 subunit K OS=Drosophila sechellia GN=GM15855 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.576e-16
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  132 EQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEA 458
            E L  +  YNPD L  LE+YV +Q  + TY L+ANL +L+LYQF P  ++  I   IL+K+L ++P  DF +   L+  +   ++  +T+I L+  LE   F  FW  A
Sbjct:   17 EMLGCIERYNPDHLKTLESYVQDQAKNNTYDLEANLAVLKLYQFNPHMLNFDITYTILLKSLTSLPHTDFVMAKCLLLPQQMKDENVQTIIDLADILERADFTLFWQRA 125          
The following BLAST results are available for this feature:
BLAST of DN618048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
EIF3K_ARATH1.537e-5184.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_ORYSJ1.301e-5082.76Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_NEMVE2.925e-1843.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_XENTR5.517e-1741.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_MOUSE5.517e-1741.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_HUMAN5.517e-1741.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_BOVIN5.517e-1741.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_XENLA1.605e-1639.42Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_DANRE2.738e-1640.38Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_DROSE3.576e-1638.53Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02A16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618048 ID=DN618048; Name=DN618048; organism=Citrus sinensis; type=EST; length=467bp
ATCGTTCTCCCTCGCTTAAGCTAAGTTGGGGTTTCTGAGAAATTCTAAGT
CTATCGATCAAACGACACCGTGCGGAGAAAATGGGAAGAGAGGCTCAACA
GCAGCAACAGCAACAGGTTTCATTCACAGTGGAGCAGCTTGTCGCCGTCA
ATCCCTACAATCCCGACATCCTTCCCGATCTCGAAAACTACGTTAACGAG
CAGGTCTTGTCACAAACATATAGTCTGGATGCAAATCTTTGCCTTCTTCG
TCTTTATCAGTTTGAACCAGAAAGAATGAGTACCCAAATTGTTGCCCGCA
TTTTAATTAAGGCTCTTATGGCAATGCCAGCTCCAGATTTCAGTCTCTGT
CTCTTTTTGATCCCAGAAAGAGTGCAAATGGAGGATCAATTCAAGACGCT
GATTGTCCTCTCTCACTACTTGGAGACAGGAAGGTTCCGCCATTTCTGGG
ATGAAGCAGCTAAGCAT
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