CX046119

Overview
NameCX046119
Unique NameCX046119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046119_ssr167 microsatellite CX046119_ssr167:167..178. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:71..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046119 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.168e-46
Identity = 89/152 (58.55%), Postives = 112/152 (73.68%), Query Frame = -1
Query:  230 KFAEFKGLKVRPXXXXXXXXXXXXXXXRLRRGAQIVCEAQET---AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 676
            +F EF+GLK                  R+ RG +I CEAQ+T   AVEVP ++D+ WQ+ VL+S  PVLVEFWAPWCGPCRMIHPI+D+L+K + GK K YK+NTDESP+ A RYGIRS+PTV+IFK GEKKD++IGAVP+ TL  +IE+FL
Sbjct:   40 RFLEFRGLKSSRSLVTQSASLGANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191          
BLAST of CX046119 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.182e-44
Identity = 79/121 (65.29%), Postives = 103/121 (85.12%), Query Frame = -1
Query:  230 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 592
            LRRG  I+CEAQ+TA  +P V D+TW+SLVL +  PV+V+FWAPWCGPC+MI PI++EL++QY GK+K +K+NTD+SP+   +YG+RSIPT+MIF  GEKKDT+IGAVPK+TL TSI+KFL
Sbjct:   57 LRRGG-IICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSIDKFL 176          
BLAST of CX046119 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.023e-42
Identity = 78/121 (64.46%), Postives = 98/121 (80.99%), Query Frame = -1
Query:  230 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 592
            LRRG  ++CEAQ+TA  +P V D+TW SLVL +  PV V+FWAPWCGPC+MI PI++EL+++Y G+ K YK+NTDESP+   +YG+RSIPT+MIF NGEKKDT+IGAV K TL TSI KFL
Sbjct:   61 LRRG--VICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179          
BLAST of CX046119 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.746e-42
Identity = 75/115 (65.22%), Postives = 97/115 (84.35%), Query Frame = -1
Query:  230 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 574
            ++  A+E   EV  V D++W  LV+ S +PVLV+FWAPWCGPCRMI PIIDEL+K+Y GK+KCYK+NTDESP+ AT+YGIRSIPTV+ FKNGE+KD+VIGAVPK+TL+  +EK++
Sbjct:   58 VLLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of CX046119 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.978e-42
Identity = 77/121 (63.64%), Postives = 97/121 (80.17%), Query Frame = -1
Query:  230 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 592
            LR  ++  C+      EV    +  W S+VL S +PVLVEFWAPWCGPCRMI P+IDEL+K+YVGK+KC KVNTD+SP+IAT YGIRSIPTV++FKNGEKK++VIGAVPK+TL T I+K++
Sbjct:   50 LRPASRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170          
BLAST of CX046119 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.079e-42
Identity = 75/121 (61.98%), Postives = 100/121 (82.64%), Query Frame = -1
Query:  230 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 592
            LRR   +VCEAQET  ++  V D+TW SLVL +  PV+V+FWAPWCGPC+MI P++++L++ Y GK+K YK+NTDESP+   +YG+RSIPT+MIF  GEKKDT+IGAVPK+TLT+S++KFL
Sbjct:   67 LRRA--VVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185          
BLAST of CX046119 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.521e-41
Identity = 74/119 (62.18%), Postives = 98/119 (82.35%), Query Frame = -1
Query:  230 RGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 586
            R + +VC+A E   EV  V D++W+  VL+S  PV+V+FWAPWCGPC++I P+IDEL+K+Y GK+  YK+NTDE+P IAT+Y IRSIPTV+ FKNGE+K+++IGAVPKSTLT SIEK+L
Sbjct:   61 RYSSVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179          
BLAST of CX046119 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.109e-40
Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = -1
Query:  230 RRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 589
            RR ++ VC+ +    EV    +  W ++V+   SPVLVEFWAPWCGPCRMI P+IDEL+K YVGK+KC KVNTD+ P+IA+ YGIRSIPTV++FK+GEKK++VIGAVPK+TL T I+K++
Sbjct:   54 RRPSRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYI 173          
BLAST of CX046119 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.359e-39
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = -1
Query:  230 VCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 571
            VC+++    EV    +  W  LV+   +PVLVEFWAPWCGPCRMI P+IDEL+K Y GK+ C KVNTD+SP++A+ YGIRSIPTV+IFK GEKK++VIGAVPKSTLTT I+K++
Sbjct:   51 VCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164          
BLAST of CX046119 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.583e-35
Identity = 63/105 (60.00%), Postives = 89/105 (84.76%), Query Frame = -1
Query:  230 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 544
            E  AV D T++++VL+S  PVLV+FWAPWCGPCR+I P++DE++ +Y  KLKC K+NTDESP++A+ YGIRSIPT+M+FK G+K +T+IGAVPK+T+  ++EK+L
Sbjct:   35 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
The following BLAST results are available for this feature:
BLAST of CX046119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
TRXM4_ARATH1.168e-4658.55Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
TRXM_BRANA3.182e-4465.29Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM1_ARATH1.023e-4264.46Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]
TRXM_PEA1.746e-4265.22Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_ORYSJ2.978e-4263.64Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM2_ARATH5.079e-4261.98Thioredoxin M-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_SPIOL2.521e-4162.18Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_WHEAT8.109e-4060.83Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM_MAIZE2.359e-3963.16Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_CHLRE1.583e-3560.00Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_5H08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-5H08-P15-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046119 ID=CX046119; Name=CX046119; organism=Citrus sinensis; type=EST; length=790bp
CAGACTTCTATTGAAATTACTCGTAGAAGTTAGAAATATATAGACAACTA
ACTTTAGTAATGGAATCAGGAAACACAATCACATCTCCTCATAACTATAC
AAGGGCAGAAGATAATTTATTGTGGAAAGCAAAGTATCTTAACCCAAGGC
ATAGTAAGCTACAAGGCAAACAAACAAATGCTACAGAGAGCCTGTTTCTA
GCAAACGCGTCCTTTACTTACCATGTCTACAAGAATTTCTCTATGCTGGT
GGTCAAAGTGGATTTAGGAACAGCACCAATCACTGTATCTTTCTTCTCGC
CATTCTTAAATATCATGACAGTTGGGATGCTCCTAATTCCATATCTAGTA
GCAATTGAAGGACTCTCATCAGTATTAACCTTATAGCATTTTAGCTTCCC
CACATATTGCTTTGATAGCTCATCAATAATAGGGTGGATCATCCGGCAAG
GCCCGCACCATGGAGCCCAGAATTCAACAAGCACAGGTGATCCAGAGTCA
AGAACAAGTGATTGCCATGTTGCATCTGTCACAGCAGGCACTTCAACGGC
AGTTTCTTGAGCCTCGCACACGATTTGCGCACCGCGACGGAGTCTGAAGC
TCGAACTCGAACCCTGACTCACCGATCCGAACGAGCGAACAGGTCTGACC
TTAAGGCCCTTGAACTCGGCGAATTTCCGACGGCCAGAGATCGAATTAAT
GGAAGAAGACGAAAGTTTAGCCGGGGAGGAGAAAACCGAAGAAGCCGAAG
CGCGAGGAACGGCGACGCACTCGAGCACGGTGGCCATCGG
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