DN618028

Overview
NameDN618028
Unique NameDN618028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5331 contig Csv1_Contig5331:879..1472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618028 vs. ExPASy Swiss-Prot
Match: DEGP1_ARATH (Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.184e-68
Identity = 130/142 (91.55%), Postives = 134/142 (94.37%), Query Frame = -3
Query:  167 TAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDET 592
            TAIYSPSGASSGVGFSIPVDTV GIVDQLV+FGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPP+GPAGKAGL STKRD YGRL+LGDIITSVNG KVSNGSDLYRILDQCKVGDEV VEVLRGD KEKI V LEPKPDE+
Sbjct:  298 TAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVTLEPKPDES 439          
BLAST of DN618028 vs. ExPASy Swiss-Prot
Match: DEGP8_ARATH (Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.954e-25
Identity = 63/139 (45.32%), Postives = 90/139 (64.75%), Query Frame = -3
Query:  179 TAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGV-SGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPK 592
            TAI++ +G S+GVGF+IP  TV  IV QL++F KV R  + I+ APD    QL V +G LVL  P    A KAGL  T R   G ++LGDII +V+ K V N ++L +ILD+  VGD+V +++ RG++  ++ + LE K
Sbjct:  308 TAIFTQTGTSAGVGFAIPSSTVLKIVPQLIQFSKVLRAGINIELAPDPVANQLNVRNGALVLQVPGKSLAEKAGLHPTSRGFAGNIVLGDIIVAVDDKPVKNKAELMKILDEYSVGDKVTLKIKRGNEDLELKISLEEK 446          
BLAST of DN618028 vs. ExPASy Swiss-Prot
Match: DEGP_BARHE (Probable periplasmic serine protease DO-like OS=Bartonella henselae GN=degP PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.825e-16
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  170 TAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP-----DQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDE 592
            TAI+SPSG + G+ F+IP  T   +V QL++ G V R  LG++  P       S+      G L+ D P  GPA KAG+ +           GD+I SVNG+K+++  DL + +     G+ V + V +  ++E I VKL+  P++
Sbjct:  263 TAIFSPSGGNVGIAFAIPAATAKQVVQQLIEKGLVQRGWLGVQIQPVTKEISDSIGLKEAKGALITD-PLKGPAAKAGIKA-----------GDVIISVNGEKINDVRDLAKRIANMSPGETVTLGVWKSGKEENIKVKLDSMPED 396          
BLAST of DN618028 vs. ExPASy Swiss-Prot
Match: DEGP_BRUSU (Probable serine protease do-like OS=Brucella suis GN=degP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  170 TAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP--DQSVEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDE 592
            TAI+SPSG S G+ F+IP  T   +VDQL+K G V R  +G++  P        LG++   G +V     +GPA KAG+ +           GD+IT+VNG+ V +  DL R +     G++  + V R ++ E+I V +   P++
Sbjct:  273 TAIFSPSGGSVGIAFAIPSSTAKQVVDQLIKKGSVERGWIGVQIQPVTKDIAASLGLAEEKGAIVASPQDDGPAAKAGIKA-----------GDVITAVNGETVQDPRDLARKVANIAPGEKAALTVWRKNKAEEINVTIAAMPND 407          
BLAST of DN618028 vs. ExPASy Swiss-Prot
Match: DEGP_BRUME (Probable serine protease do-like OS=Brucella melitensis GN=degP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  170 TAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP--DQSVEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDE 592
            TAI+SPSG S G+ F+IP  T   +VDQL+K G V R  +G++  P        LG++   G +V     +GPA KAG+ +           GD+IT+VNG+ V +  DL R +     G++  + V R ++ E+I V +   P++
Sbjct:  273 TAIFSPSGGSVGIAFAIPSSTAKQVVDQLIKKGSVERGWIGVQIQPVTKDIAASLGLAEEKGAIVASPQDDGPAAKAGIKA-----------GDVITAVNGETVQDPRDLARKVANIAPGEKAALTVWRKNKAEEINVTIAAMPND 407          
BLAST of DN618028 vs. ExPASy Swiss-Prot
Match: DEGP_BRUAB (Probable serine protease do-like OS=Brucella abortus GN=degP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  170 TAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP--DQSVEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDE 592
            TAI+SPSG S G+ F+IP  T   +VDQL+K G V R  +G++  P        LG++   G +V     +GPA KAG+ +           GD+IT+VNG+ V +  DL R +     G++  + V R ++ E+I V +   P++
Sbjct:  273 TAIFSPSGGSVGIAFAIPSSTAKQVVDQLIKKGSVERGWIGVQIQPVTKDIAASLGLAEEKGAIVASPQDDGPAAKAGIKA-----------GDVITAVNGETVQDPRDLARKVANIAPGEKAALTVWRKNKAEEINVTIAAMPND 407          
BLAST of DN618028 vs. ExPASy Swiss-Prot
Match: DEGP_BRUA2 (Probable serine protease do-like OS=Brucella abortus (strain 2308) GN=degP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  170 TAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP--DQSVEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDE 592
            TAI+SPSG S G+ F+IP  T   +VDQL+K G V R  +G++  P        LG++   G +V     +GPA KAG+ +           GD+IT+VNG+ V +  DL R +     G++  + V R ++ E+I V +   P++
Sbjct:  273 TAIFSPSGGSVGIAFAIPSSTAKQVVDQLIKKGSVERGWIGVQIQPVTKDIAASLGLAEEKGAIVASPQDDGPAAKAGIKA-----------GDVITAVNGETVQDPRDLARKVANIAPGEKAALTVWRKNKAEEINVTIAAMPND 407          
BLAST of DN618028 vs. ExPASy Swiss-Prot
Match: DEGP_RHIME (Probable serine protease do-like OS=Rhizobium meliloti GN=degP1 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 46/146 (31.51%), Postives = 75/146 (51.37%), Query Frame = -3
Query:  170 TAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP--DQSVEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDE 592
            TAI+SPSG + G+ F+IP      +VD L+K G V+R  LG++  P      E LG+S   G LV++     P  KAG+ +           GD++T++NG+ V +  DL R +   + G    V + R  + E + +++   P +
Sbjct:  260 TAIFSPSGGNVGIAFAIPASVAKDVVDSLIKDGTVSRGWLGVQIQPVTKDIAESLGLSEANGALVVEPQAGSPGEKAGIKN-----------GDVVTALNGEPVKDPRDLARRVAALRPGSTAEVTLWRSGKSETVNLEIGTLPSD 394          
BLAST of DN618028 vs. ExPASy Swiss-Prot
Match: DEGP_RICPR (Probable serine protease do-like OS=Rickettsia prowazekii GN=degP PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = -3
Query:  170 TAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP-DQSVEQL----GVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDE 592
            TAI+SP G + G+GF+IP +T   I+++L K GKV+R  LG+      + + ++    G +GVLV     NGP  KAG+             GDII     + V N   L  I+    +  EV +++LR  Q+ ++P+K+    +E
Sbjct:  263 TAIFSPLGTNIGIGFAIPSNTAKPIIERLKKDGKVSRGRLGVTIQDLTEEISEVLGFKGTNGVLVSKVQENGPGYKAGIKK-----------GDIIIKFGDRLVKNTKKLRVIIADTPINQEVKLKILRDAQELELPIKVTADNEE 397          
BLAST of DN618028 vs. ExPASy Swiss-Prot
Match: HTOA_HAEIN (Probable periplasmic serine protease do/hhoA-like OS=Haemophilus influenzae GN=HI1259 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 46/141 (32.62%), Postives = 77/141 (54.61%), Query Frame = -3
Query:  185 TAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQS--VEQLGVS---GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 592
            TAI SPSG ++G+ F+IP +  + +V Q+++FG+V R +LGIK     +   +   VS   G  V +  P   A KAGL +           GDIIT++NG+K+S+ +++   +     G E+ +  LR  +   + +KL+
Sbjct:  242 TAIISPSGGNAGIAFAIPSNQASNLVQQILEFGQVRRGLLGIKGGELNADLAKAFNVSAQQGAFVSEVLPKSAAEKAGLKA-----------GDIITAMNGQKISSFAEIRAKIATTGAGKEISLTYLRDGKSHDVKMKLQ 371          
The following BLAST results are available for this feature:
BLAST of DN618028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
DEGP1_ARATH3.184e-6891.55Protease Do-like 1, chloroplastic OS=Arabidopsis t... [more]
DEGP8_ARATH1.954e-2545.32Protease Do-like 8, chloroplastic OS=Arabidopsis t... [more]
DEGP_BARHE4.825e-1634.93Probable periplasmic serine protease DO-like OS=Ba... [more]
DEGP_BRUSU1.075e-1534.93Probable serine protease do-like OS=Brucella suis ... [more]
DEGP_BRUME1.075e-1534.93Probable serine protease do-like OS=Brucella melit... [more]
DEGP_BRUAB1.075e-1534.93Probable serine protease do-like OS=Brucella abort... [more]
DEGP_BRUA21.075e-1534.93Probable serine protease do-like OS=Brucella abort... [more]
DEGP_RHIME1.716e-1331.51Probable serine protease do-like OS=Rhizobium meli... [more]
DEGP_RICPR2.927e-1332.88Probable serine protease do-like OS=Rickettsia pro... [more]
HTOA_HAEIN1.453e-1232.62Probable periplasmic serine protease do/hhoA-like ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02A06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618028 ID=DN618028; Name=DN618028; organism=Citrus sinensis; type=EST; length=594bp
TTTTTTTTTTTAGCTTATCAATTTAGTGGAATCTTGATATTACAATTGCT
GAAATATGTACAAGAAAAGACCAGTTTTGGTAAAACAATTGATGCACAAC
TACAATGGCATTTTTATGGTATATGTGCTACACTTAAATATACAAACCCA
ACCTTTTGGCATATTAAGTCTCATCTGGTTTTGGTTCAAGTTTTACCGGA
ATCTTCTCCTTCTGATCTCCGCGCAATACCTCAACAATCACCTCATCTCC
AACTTTACATTGGTCAAGAATTCTGTACAAGTCGCTGCCATTGGAGACCT
TTTTTCCATTCACAGATGTTATGATGTCACCCAAAATAAGTCTGCCATAG
GCATCGCGTTTGGTTGATAGCAAGCCTGCTTTGCCAGCAGGACCGTTTGG
AGGAGCATCTAAGACGAGCACTCCACTTACACCTAACTGCTCCACAGATT
GATCAGGTGCGAACTTAATCCCTAAAATAGGTCGTGTGACCTTACCAAAC
TTAACTAGTTGATCGACAATGCCATTTACAGTGTCAACTGGAATCGAAAA
TCCAACACCAGAGGATGCACCAGATGGAGAGTATATAGCTGTAT
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