DN618016

Overview
NameDN618016
Unique NameDN618016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:40..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618016 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 321.627 bits (823), Expect = 2.619e-87
Identity = 176/229 (76.86%), Postives = 191/229 (83.41%), Query Frame = 3
Query:   45 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVALRRARTPK--IYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAM 725
            MASTFTA SSI SM+APNG  +D                    FGRRQSV  R  R+    + AAK+LHFNKDG  +++LQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+GNMIAEAM
Sbjct:    1 MASTFTATSSIGSMVAPNGHKSDKKLISKLSSSS---------FGRRQSVCPRPRRSSSAIVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAM 220          
BLAST of DN618016 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.420e-87
Identity = 176/229 (76.86%), Postives = 191/229 (83.41%), Query Frame = 3
Query:   45 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSV--ALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAM 725
            MASTFTA SSI SM+APN   TD                    FGRRQ+V   LRR+    + AAK+LHFNKDG  ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+G+MIAEAM
Sbjct:    1 MASTFTATSSIGSMVAPNAHKTDKKLMNKLSSSS---------FGRRQNVFPKLRRSSPAVVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAM 220          
BLAST of DN618016 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 4.327e-82
Identity = 161/176 (91.48%), Postives = 170/176 (96.59%), Query Frame = 3
Query:  201 RRARTPKIYA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAM 725
            R+ R  K+ A AK+LHFNKDG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALV+ELK+MSKEVEDSELADVAAVSAGNN+EVGNMIAEA+
Sbjct:   39 RKNRNVKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEVEDSELADVAAVSAGNNHEVGNMIAEAL 214          
BLAST of DN618016 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.004e-54
Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 3
Query:  369 PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAM 725
            P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV+AAGANPV ITRGIEKT+KALV ELK+MSKEVEDSELADVAAVSAGNNYE+GNMIAEAM
Sbjct:    1 PQIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVIAAGANPVQITRGIEKTAKALVLELKKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAM 119          
BLAST of DN618016 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.773e-51
Identity = 102/158 (64.56%), Postives = 130/158 (82.28%), Query Frame = 3
Query:  255 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAM 725
            D  A + L+ GVN LAD V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELEDP+EN GA+L+R+ A+KTND+AGDGTTT+ VLAQ LI EG++ VAAGANP+ + RG+EKT   LV E+  M+K VED++ +A+VA +S+GN+ E+G MIAEAM
Sbjct:    8 DETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIGQMIAEAM 165          
BLAST of DN618016 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.316e-51
Identity = 102/161 (63.35%), Postives = 127/161 (78.88%), Query Frame = 3
Query:  243 HFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAM 725
            H   D  + + L+ GVN LAD V +TLGPKGRNVVLE K+GAP+I+NDGVT+AKEVELEDP+EN GA+L+R+ A+KTND+AGDGTTT+ VLAQ LI EG+K VAAGANPV + +GI+KT  ALV E++  SK V    +A VA +SAGN+ EVG MIA+AM
Sbjct:    4 HVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAGDAIAQVATISAGNDTEVGQMIAQAM 164          
BLAST of DN618016 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.950e-51
Identity = 101/165 (61.21%), Postives = 135/165 (81.82%), Query Frame = 3
Query:  231 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAM 725
            AK + F+++  + + L+ GVN LAD V +TLGPKGRNV+LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ AAKT D+AGDGTTT+ VL Q LI EG+K VAAG+NPV + RGI+KT++ALV+E+ +++K VE S +A VA VSAGN+ EVG MIA+A+
Sbjct:    2 AKIISFDEE--SRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVAAKTKDVAGDGTTTATVLVQALIKEGLKNVAAGSNPVSLKRGIDKTTEALVAEIAKVAKPVEGSAIAQVATVSAGNDEEVGAMIAQAV 164          
BLAST of DN618016 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.158e-51
Identity = 101/165 (61.21%), Postives = 133/165 (80.61%), Query Frame = 3
Query:  231 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAM 725
            AK + F+++  + + L+ GVN LAD V +TLGPKGRNV+LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ A+KT D+AGDGTTT+ VL Q LI EG+K VAAG NPV + RGI+KT++ALV E+ +++K VE S +A VA VSAGN+ EVG MIAEA+
Sbjct:    2 AKIISFDEE--SRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVASKTKDVAGDGTTTATVLVQALIKEGLKNVAAGINPVSLKRGIDKTTEALVEEIAKVAKPVEGSAIAQVATVSAGNDEEVGGMIAEAV 164          
BLAST of DN618016 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.501e-50
Identity = 97/157 (61.78%), Postives = 125/157 (79.62%), Query Frame = 3
Query:  255 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAM 725
            D  + + L+ G+N LAD V +T+GPKGRNV+LE KYGAP+IVNDG+TVAK++ELEDP+EN GAKL+++ A+KT D+AGDGTTT+ VLAQ +I EG+K VAAGANPV + RGIEKT   LV E++ ++K VE   +A VA VSAG + EVG MI+EAM
Sbjct:    8 DDKSRRSLERGINTLADAVRITMGPKGRNVLLEKKYGAPQIVNDGITVAKDIELEDPLENTGAKLIQEVASKTKDIAGDGTTTATVLAQSMIKEGLKNVAAGANPVAVRRGIEKTVSLLVKEIQTVAKPVEGEAIAQVATVSAGGDAEVGRMISEAM 164          
BLAST of DN618016 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.560e-50
Identity = 99/165 (60.00%), Postives = 134/165 (81.21%), Query Frame = 3
Query:  231 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAM 725
            AK + F+++  + + L+ GVN LAD V +TLGPKGRNV+LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ A+KT D+AGDGTTT+ VL Q LI EG+K VAAG NPV + RGI+KT++ALV+E+ +++K VE S +A VA VS+GN+ EVG MIA+A+
Sbjct:    2 AKIISFDEE--SRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVASKTKDVAGDGTTTATVLVQALIREGLKNVAAGTNPVSLKRGIDKTTEALVAEIAKVAKPVEGSAIAQVATVSSGNDEEVGAMIAQAV 164          
The following BLAST results are available for this feature:
BLAST of DN618016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH2.619e-8776.86RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA3.420e-8776.86RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA4.327e-8291.48RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE1.004e-5493.28RuBisCO large subunit-binding protein subunit beta... [more]
CH602_GLOVI1.773e-5164.5660 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH601_ACAM12.316e-5163.3560 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_ANAVT3.950e-5161.2160 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_ANASL5.158e-5161.2160 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH601_TRIEI1.501e-5061.7860 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_ANASP2.560e-5060.0060 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01P24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618016 ID=DN618016; Name=DN618016; organism=Citrus sinensis; type=EST; length=726bp
TAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTAAACGAATAAATGGCG
TCGACTTTCACTGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGG
ACGAATGACTGATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCAC
TTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTA
CGCAGGGCCCGCACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAA
CAAGGATGGATATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTG
CAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTA
GAGAGCAAGTACGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGC
CAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAG
TGAGACAAGCAGCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACA
ACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGT
GGCAGCTGGTGCAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACAT
CTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGAT
AGTGAACTTGCCGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGT
TGGGAATATGATTGCAGAAGCCATGA
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