DN618011

Overview
NameDN618011
Unique NameDN618011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:549..1055. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618011 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.918e-43
Identity = 81/89 (91.01%), Postives = 88/89 (98.88%), Query Frame = -3
Query:  236 NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 502
            NKITDFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPKGKGIKL+I+EEA+KR
Sbjct:  163 NKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251          
BLAST of DN618011 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 173.326 bits (438), Expect = 5.579e-43
Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = -3
Query:  236 ENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 505
            ENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  166 ENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of DN618011 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.579e-43
Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = -3
Query:  236 ENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 505
            ENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  166 ENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of DN618011 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 7.287e-43
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = -3
Query:  236 NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 502
            NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPK KGIKLSIIEEARKR
Sbjct:  167 NKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255          
BLAST of DN618011 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.120e-42
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3
Query:  236 NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 502
            NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  167 NKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255          
BLAST of DN618011 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.120e-42
Identity = 80/89 (89.89%), Postives = 87/89 (97.75%), Query Frame = -3
Query:  236 NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 502
            NKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  167 NKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of DN618011 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.769e-42
Identity = 79/89 (88.76%), Postives = 87/89 (97.75%), Query Frame = -3
Query:  236 NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 502
            NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKG+KPWVSLPKGKGIKL+IIE+ARKR
Sbjct:  167 NKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255          
BLAST of DN618011 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.056e-42
Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = -3
Query:  236 NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 502
            NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  167 NKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255          
BLAST of DN618011 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 7.558e-32
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = -3
Query:  236 KITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 499
            KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  168 KITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of DN618011 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 9.871e-32
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = -3
Query:  236 KITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 499
            KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  168 KITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
The following BLAST results are available for this feature:
BLAST of DN618011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RS4_PRUAR1.918e-4391.0140S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS42_ARATH5.579e-4390.0040S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH5.579e-4390.0040S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_GOSHI7.287e-4392.1340S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_ORYSJ2.120e-4289.8940S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS43_ARATH2.120e-4289.8940S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS4_SOLTU2.769e-4288.7640S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_MAIZE8.056e-4287.6440S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4Y1_MONDO7.558e-3268.1840S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_MONDO9.871e-3268.1840S ribosomal protein S4, X isoform OS=Monodelphis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01P22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618011 ID=DN618011; Name=DN618011; organism=Citrus sinensis; type=EST; length=507bp
TAGGATTAAATATGTTGAAAATAACATCCACCAAATAGTAGCTAAAATAA
AAAAGGACAAAGCAGGTTCAAAATTGTGCTGATAAAAATAAAAATAAAAA
TAAAGATTCATTTTTGCATCGGTCCTACTTCAGCTTTAGAGAGTGCCAAT
CAGCTCTAATTCAACAAGAAAAAACAAAGCAGCAAAATGCATCCAAATTC
ATTGTAAAAGCTTAAGCAGCAGCCTGGGCAGCCTGTCTCTTCCTAGCTTC
CTCAATGATGGACAACTTAATACCCTTGCCCTTAGGAAGTGACACCCATG
GTTTTGAACCCTTCCCGATGGTGAACACATTGCCTAGACGAGTTGCAAAC
TCATGACCAAGGGCATCTTGAATATGGATGGTCTCAAAACTTCCCTTATG
CTTTTCCCTGTTCTTGATGATTCCAACTCGACCTCTGTTTCTACCCCCAG
TGACCATGACAATATTCCCAACATCAAACTTGATGAAGTCAGTGATCTTG
TTCTCTT
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