DN618010

Overview
NameDN618010
Unique NameDN618010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618010 vs. ExPASy Swiss-Prot
Match: LMBD1_ARATH (LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.276e-40
Identity = 79/105 (75.24%), Postives = 85/105 (80.95%), Query Frame = 3
Query:  294 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIP 608
            MGDFN                 ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRHAIYNGACNLTLPMKDLWLA+YI+DA+LVFFVIP
Sbjct:    1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHAIYNGACNLTLPMKDLWLAIYIVDAILVFFVIP 105          
BLAST of DN618010 vs. ExPASy Swiss-Prot
Match: LMBD2_ARATH (LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.882e-40
Identity = 79/105 (75.24%), Postives = 85/105 (80.95%), Query Frame = 3
Query:  294 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIP 608
            MGDFN                 ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRH+IYNGACNLTLPMKDLWLAVYI+DAVLVFF+IP
Sbjct:    1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHSIYNGACNLTLPMKDLWLAVYIVDAVLVFFIIP 105          
BLAST of DN618010 vs. ExPASy Swiss-Prot
Match: LMBD1_ORYSJ (LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.994e-36
Identity = 75/105 (71.43%), Postives = 82/105 (78.10%), Query Frame = 3
Query:  294 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIP 608
            MGDFN                 +VYLL+NYQHPDDANQAYFPK VVVLG++VA +SILMLPADVANRQACR AIY+GAC+LTLPMK LWLAVYI DAVLVF VIP
Sbjct:    1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWLAVYIADAVLVFLVIP 105          
BLAST of DN618010 vs. ExPASy Swiss-Prot
Match: Y3610_DICDI (LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum GN=DDB_G0293610 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  360 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIP 608
            ++YL+  +QHPDD N AYFPK +V+LG+++AA SILMLP DVAN+         G      PM  LW+ +YI+ AV    + P
Sbjct:   21 SLYLIAYFQHPDDKNVAYFPKIIVILGITLAATSILMLPLDVANQGG------KGG----FPMDILWIVIYIVVAVFAIVICP 93          
BLAST of DN618010 vs. ExPASy Swiss-Prot
Match: Y3707_DICDI (LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.284e-13
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  360 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIP 608
            ++YL+  +QHPDD N AYFPK +V+LGL++AA SILMLP DVAN         +G      PM  LW+ +YI  AV    + P
Sbjct:   21 SLYLIAYFQHPDDKNVAYFPKIIVILGLTLAATSILMLPLDVAN---------DGGSG-GFPMDILWIIIYIAVAVFAVVICP 93          
The following BLAST results are available for this feature:
BLAST of DN618010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LMBD1_ARATH2.276e-4075.24LIMR family protein At3g08930 OS=Arabidopsis thali... [more]
LMBD2_ARATH3.882e-4075.24LIMR family protein At5g01460 OS=Arabidopsis thali... [more]
LMBD1_ORYSJ1.994e-3671.43LIMR family protein Os06g0128200 OS=Oryza sativa s... [more]
Y3610_DICDI2.372e-1345.78LIMR family protein DDB_G0293610 OS=Dictyostelium ... [more]
Y3707_DICDI5.284e-1346.99LIMR family protein DDB_G0283707 OS=Dictyostelium ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01P21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618010 ID=DN618010; Name=DN618010; organism=Citrus sinensis; type=EST; length=609bp
GTTCCGCTGCTTCGCACGGGCCACATCTCAATTTACACTAAACCCCAAAG
CCACCGCACTCCCAATCCCATAATTTCCCCGTAATTGATCCACCTCCCCA
AGGATACCATCGTCATTTCGGAACTTACAAGCCGAAGGGGAACCCACAAC
AGAGCACCTCACCGGACCAAACGTCCCCTCTCTCAATTTCAAAAAAACAA
AAAAAAAAGGACCAGATCTACACAAAATTTGCTGAAACCCTAATTCGTGC
GATCCGTCGTTTTGATCGGAATCGAGAGAGAGGTTAAAACAAAATGGGTG
ATTTTAACCTCGCTCTGGTGATCGTCGCGATAGTGGTGTGCGTTTTGGTA
TTCATTTTCAATGTCTATCTTCTCGTTAACTACCAGCATCCCGACGACGC
CAACCAGGCGTATTTTCCGAAATTCGTCGTCGTTTTGGGGCTTTCCGTTG
CCGCTATTTCAATTCTTATGTTGCCGGCTGACGTGGCCAATCGGCAGGCG
TGTAGGCACGCGATTTATAATGGCGCCTGTAATCTCACCTTGCCGATGAA
GGATCTTTGGCTTGCTGTCTATATTCTCGATGCGGTGCTTGTTTTCTTCG
TTATTCCGT
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