DN618009

Overview
NameDN618009
Unique NameDN618009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length505
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4727 contig Csv1_Contig4727:439..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN618009 vs. ExPASy Swiss-Prot
Match: LMBD2_ARATH (LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.442e-14
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = -2 
Query:  385 LYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS 504
            LYKYNVFQI FVVLAGLTF+YY AFGWRR+KPSG+FQLS+
Sbjct:  470 LYKYNVFQIGFVVLAGLTFLYYIAFGWRRKKPSGRFQLST 509
[Close]
BLAST of DN618009 vs. ExPASy Swiss-Prot
Match: LMBD1_ARATH (LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.701e-13
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = -2 
Query:  385 LYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS 504
            LYKYNVFQI FV+LAGLTF+YY AFGWRR+K SG+FQLSS
Sbjct:  470 LYKYNVFQIGFVILAGLTFLYYIAFGWRRKKTSGRFQLSS 509
The following BLAST results are available for this feature:
BLAST of DN618009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LMBD2_ARATH5.442e-1485.00LIMR family protein At5g01460 OS=Arabidopsis thali... [more]
LMBD1_ARATH2.701e-1382.50LIMR family protein At3g08930 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01P21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618009 ID=DN618009; Name=DN618009; organism=Citrus sinensis; type=EST; length=505bp
TTTTTTGTTTTTTTTTTTCATTCTCAATGATTATATTACATCAAGGTCAG
TTCTACAAACTCAGTCACCATATCTGCTGAGGATATTTCACTTACACGCC
CAAGCAAAACGTATAGCATAAACCAAACAAAGAATAATAGATACAAAAAG
AGGGAAAACAAGAAGAAACAACAGCAGCACCAGCAGCAACATTCGCATGC
TGCTCTAACTACAGCAACCCATTTTTTCCGGATGATACATGCGCCTATCT
CACTAAACTTTTTGACCTGAAAGAAAACCAGGCCGTAAACATCCGATTAC
ATGAAACACACTTCACTGAGATTATCAATCTTAGAATTTCTTCAGCTCTA
GTGGGTGCAGGCTCTTCTAAGCAAAGCAACTTCACGAGGACAGTTGGAAC
TTGCCACTTGGTTTTCTTCTTCTCCACCCAAAGGCAGCATAATAAACGAA
GGTCAACCCTGCTAGCACAACGAAAGCAATTTGGAACACATTATACTTGT
ACAAG
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