DN618000

Overview
NameDN618000
Unique NameDN618000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9357 contig Csv1_Contig9357:70..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618000 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.157e-34
Identity = 66/111 (59.46%), Postives = 87/111 (78.38%), Query Frame = 2
Query:  275 RQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFD 607
            ++KYCE+IH+T RR TR V VGNV IG  HPIR+Q+MTT+ T+DV  T+E+V+R+ADQG ++VR+TVQG +EADAC  IK  L+++ Y IPLVADIHF P  A+RV +  D
Sbjct:    3 QKKYCEAIHQTERRPTRIVNVGNVGIGGNHPIRIQSMTTSSTRDVEATIEQVIRLADQGCEIVRVTVQGIKEADACEHIKKGLIKRGYQIPLVADIHFYPPAAMRVVDFVD 113          
BLAST of DN618000 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis GN=ispG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  296 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFD 607
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V +C D
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVD 109          
BLAST of DN618000 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=ispG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  296 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFD 607
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V +C D
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVD 109          
BLAST of DN618000 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=ispG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  296 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFD 607
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V +C D
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVD 109          
BLAST of DN618000 vs. ExPASy Swiss-Prot
Match: ISPG_CHLT2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ispG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  296 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFD 607
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V +C D
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQELGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVD 109          
BLAST of DN618000 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 2
Query:  311 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFD 607
            RRKT +V VGN+ +GSEH I++Q+MTT  T DV GTV ++  + + G ++VR+TVQG +E  AC +IK+ LVQ+N  IPLVADIHF P  A+ VA+  D
Sbjct:   11 RRKTLSVKVGNLFVGSEHSIKIQSMTTTATTDVEGTVRQIYALQECGCEIVRVTVQGLKEVGACEQIKDRLVQQNVTIPLVADIHFFPQAAIHVADFVD 109          
BLAST of DN618000 vs. ExPASy Swiss-Prot
Match: ISPG_CHLPN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia pneumoniae GN=ispG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.312e-23
Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  311 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFD 607
            RRKT TV +GN+ IGS+H I+ Q+MTT  T D+  TVE++  +A+   D+VR+TVQG +EA AC +IK  L+    NIPLVADIHF P  A+ VA+  D
Sbjct:   12 RRKTHTVRIGNLYIGSDHSIKTQSMTTTLTTDIDSTVEQIYALAEHNCDIVRVTVQGIKEAQACEKIKERLIALGLNIPLVADIHFFPQAAMLVADFAD 110          
BLAST of DN618000 vs. ExPASy Swiss-Prot
Match: ISPG_CHLFF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=ispG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  302 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFD 607
            +T RR T +V +G++ +GSEH I++Q+MTT  T DV  TV ++  + +   D+ R+TVQG +EA AC  IK  L+    +IPLVADIHF P  A+ VA+  D
Sbjct:    9 QTARRYTHSVKIGSLFVGSEHSIKMQSMTTTPTSDVDATVAQICSLVEAKCDIARVTVQGVKEAQACEHIKERLLTMGLDIPLVADIHFFPQAAMHVADFVD 110          
BLAST of DN618000 vs. ExPASy Swiss-Prot
Match: ISPG_CHLCV (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila caviae GN=ispG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.612e-20
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  302 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFD 607
            +  RR T +V +GN+ +GSEH I++Q+MTT  T DV  TV ++  + +   ++ R+TVQG +EA AC  IK  L+     IPLVADIHF P  A+ VA+  D
Sbjct:    9 QAARRHTHSVKIGNLYVGSEHSIKMQSMTTTPTADVEATVTQICALVEAKCEIARVTVQGIKEAQACEHIKERLLSMGIAIPLVADIHFFPQAAMHVADFVD 110          
BLAST of DN618000 vs. ExPASy Swiss-Prot
Match: ISPG_CELJU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=ispG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.612e-20
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 2
Query:  284 YCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE 598
            +CES    VRRK+R +MVGNV +G   PI VQ+MT  +T DVA TVE++ RI   GAD+VR++V     A+A       L++K  NIPLVADIHF   +ALRVA+
Sbjct:    2 HCES--PIVRRKSRQIMVGNVPVGGGAPISVQSMTNTETTDVAATVEQIRRIQTAGADIVRVSVPTMEAAEAF-----GLIRKQVNIPLVADIHFDYRIALRVAD 99          
The following BLAST results are available for this feature:
BLAST of DN618000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
ISPG_PARUW4.157e-3459.464-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTR4.607e-2550.964-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTB4.607e-2550.964-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTA4.607e-2550.964-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLT24.607e-2550.964-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU2.986e-2453.544-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLPN4.312e-2352.534-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLFF1.534e-2046.084-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLCV7.612e-2045.104-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CELJU7.612e-2051.434-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01P16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618000 ID=DN618000; Name=DN618000; organism=Citrus sinensis; type=EST; length=609bp
CTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTAGGCGTAGTATT
TTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTCCGGGCCTAAAG
AGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGATTTTGTGAGAGT
TTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATTCACTGTGATAA
GGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTCAGCCTGCATCA
GAAGGAAGCCCCCTATTAGTTCCAAGACAAAAGTATTGTGAATCCATTCA
CAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGGAAATGTAGCCA
TTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTACAAATGACACT
AAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATAGCAGACCAGGG
AGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGAGGCAGATGCAT
GTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACAATATACCTCTG
GTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGAGTTGCTGAATG
CTTTGACAA
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