DN617984

Overview
NameDN617984
Unique NameDN617984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617984_ssr309 microsatellite DN617984_ssr309:309..320. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617984 vs. ExPASy Swiss-Prot
Match: CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.098e-82
Identity = 146/170 (85.88%), Postives = 154/170 (90.59%), Query Frame = 3
Query:    3 IGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVLR 512
            +GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKW+WLRYFNNDRDRRDLITCGS+SGVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC SGKCGLFG+GGLIMFDVS+V VRYH  DIIPVT            YNH+LHKVLR
Sbjct:  188 VGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFNNDRDRRDLITCGSASGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGSGGLIMFDVSHVEVRYHAADIIPVTLIGVFGGILGSLYNHLLHKVLR 357          
BLAST of DN617984 vs. ExPASy Swiss-Prot
Match: CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.318e-79
Identity = 141/170 (82.94%), Postives = 149/170 (87.65%), Query Frame = 3
Query:    3 IGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVLR 512
            +GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGG DNHRIKW+WLRYFNNDRDRRDLITCGS++GVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLR FIEIC SGKCGLFG GGLIMFDVS+V   YHV DIIPV             YNH+LHKVLR
Sbjct:  187 VGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNHRIKWRWLRYFNNDRDRRDLITCGSAAGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLREFIEICNSGKCGLFGKGGLIMFDVSHVTYTYHVTDIIPVMLIGVIGGILGSLYNHLLHKVLR 356          
BLAST of DN617984 vs. ExPASy Swiss-Prot
Match: CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.437e-60
Identity = 107/169 (63.31%), Postives = 132/169 (78.11%), Query Frame = 3
Query:    6 GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVLR 512
            GSI  VAAG  +GKEGP+VH G+CIA+LLGQGG   +R+ W+WLR+F NDRDRRDLITCG+++GV AAFRAPVGGVLF+LEE A+WWR+ALLWRTFF+TAVV VVLR+ IE C SG+CGLFG GGLIMFDV++ PV Y   D++ +             YN+++ KVLR
Sbjct:  198 GSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYRLTWKWLRFFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRNALLWRTFFTTAVVAVVLRSLIEFCRSGRCGLFGKGGLIMFDVNSGPVLYSTPDLLAIVFLGVIGGVLGSLYNYLVDKVLR 366          
BLAST of DN617984 vs. ExPASy Swiss-Prot
Match: CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=At5g33280 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.035e-56
Identity = 102/170 (60.00%), Postives = 131/170 (77.06%), Query Frame = 3
Query:    3 IGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVLR 512
            IG+I AV+A L +GK GP+VH G+C+AS+LGQGG   +R+ W+WLR+F NDRDRRDL+TCG+++G+ A+FRAPVGGVLF+LEE+++W  SALLWR FFSTAVV +VLRA I++C SGKCGLFG GGLIMFDV +    YH+ D++PV             YN +L KVLR
Sbjct:  172 IGNISAVSASLLIGKAGPMVHTGACVASILGQGGSKRYRLTWRWLRFFKNDRDRRDLVTCGAAAGIAASFRAPVGGVLFALEEMSSW--SALLWRIFFSTAVVAIVLRALIDVCLSGKCGLFGKGGLIMFDVYSENASYHLGDVLPVLLLGVVGGILGSLYNFLLDKVLR 339          
BLAST of DN617984 vs. ExPASy Swiss-Prot
Match: CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 7.434e-47
Identity = 86/146 (58.90%), Postives = 112/146 (76.71%), Query Frame = 3
Query:    6 GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPV 443
            GSIG+V  GL LGKEGPLVH G+CIASLLGQGG   + +  +W + F +DRDRRDL+TCG ++GV AAFRAPVGGVLF+LEEV +WWRS L+WR FF++A+V VV+R  +  C SG CG FG GG I++DVS+    Y+  +++P+
Sbjct:  178 GSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWPQLFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGICGHFGGGGFIIWDVSDGQDDYYFKELLPM 323          
BLAST of DN617984 vs. ExPASy Swiss-Prot
Match: CLCN7_BOVIN (H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN=CLCN7 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.668e-22
Identity = 57/146 (39.04%), Postives = 85/146 (58.22%), Query Frame = 3
Query:    6 GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPV 443
            G I +V  GL +GKEGP++H GS IA+ + QG   + +  ++   YF  D ++RD ++ G+++GV AAF APVGGVLFSLEE A++W   L WR FF++ +    L  F+     G      + GLI F   +     +V+  IP+
Sbjct:  237 GVILSVVGGLAVGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLN-FVLSIYHGNAWDLSSPGLINFGRFDTETMVYVIHEIPI 381          
BLAST of DN617984 vs. ExPASy Swiss-Prot
Match: CLCN7_RAT (H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus GN=Clcn7 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = 3
Query:    6 GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPV 443
            G I +V  GL +GKEGP++H GS IA+ + QG   + +  ++   YF  D ++RD ++ G+++GV AAF APVGGVLFSLEE A++W   L WR FF++ +    L  F+     G      + GLI F   +     + +  IPV
Sbjct:  231 GVILSVVGGLAVGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLN-FVLSIYHGNMWDLSSPGLINFGRFDSEKMAYTIHEIPV 375          
BLAST of DN617984 vs. ExPASy Swiss-Prot
Match: CLCN7_MOUSE (H(+)/Cl(-) exchange transporter 7 OS=Mus musculus GN=Clcn7 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = 3
Query:    6 GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPV 443
            G I +V  GL +GKEGP++H GS IA+ + QG   + +  ++   YF  D ++RD ++ G+++GV AAF APVGGVLFSLEE A++W   L WR FF++ +    L  F+     G      + GLI F   +     + +  IPV
Sbjct:  231 GVILSVVGGLAVGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLN-FVLSIYHGNMWDLSSPGLINFGRFDSEKMAYTIHEIPV 375          
BLAST of DN617984 vs. ExPASy Swiss-Prot
Match: CLCN7_HUMAN (H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens GN=CLCN7 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = 3
Query:    6 GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPV 443
            G I +V  GL +GKEGP++H GS IA+ + QG   + +  ++   YF  D ++RD ++ G+++GV AAF APVGGVLFSLEE A++W   L WR FF++ +    L  F+     G      + GLI F   +     + +  IPV
Sbjct:  233 GVILSVVGGLAVGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLN-FVLSIYHGNMWDLSSPGLINFGRFDSEKMAYTIHEIPV 377          
BLAST of DN617984 vs. ExPASy Swiss-Prot
Match: CLCD_DICDI (Chloride channel protein D OS=Dictyostelium discoideum GN=clcD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   18 AVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVL 323
            AV++GL  G EGP++HIG+ + +   Q        K  +LR F ND+D+RD +T G+ +GV AAF AP+GG LFSLEEV+++W  AL WR FF   V    +
Sbjct:  361 AVSSGLQAGSEGPMIHIGAIVGNGFSQAQSKEFGFKIPFLRSFRNDKDKRDFVTSGAGAGVAAAFSAPLGGTLFSLEEVSSFWSIALTWRAFFCCMVATYTM 462          
The following BLAST results are available for this feature:
BLAST of DN617984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
CLCA_ARATH1.098e-8285.88Chloride channel protein CLC-a OS=Arabidopsis thal... [more]
CLCB_ARATH4.318e-7982.94Chloride channel protein CLC-b OS=Arabidopsis thal... [more]
CLCC_ARATH3.437e-6063.31Chloride channel protein CLC-c OS=Arabidopsis thal... [more]
CLCG_ARATH1.035e-5660.00Putative chloride channel-like protein CLC-g OS=Ar... [more]
CLCD_ARATH7.434e-4758.90Chloride channel protein CLC-d OS=Arabidopsis thal... [more]
CLCN7_BOVIN1.668e-2239.04H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN... [more]
CLCN7_RAT1.844e-2139.04H(+)/Cl(-) exchange transporter 7 OS=Rattus norveg... [more]
CLCN7_MOUSE1.844e-2139.04H(+)/Cl(-) exchange transporter 7 OS=Mus musculus ... [more]
CLCN7_HUMAN1.844e-2139.04H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens ... [more]
CLCD_DICDI1.844e-2146.08Chloride channel protein D OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01P08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617984 ID=DN617984; Name=DN617984; organism=Citrus sinensis; type=EST; length=619bp
TTATTGGAAGCATTGGAGCTGTGGCCGCAGGGCTAGATTTGGGAAAAGAA
GGGCCTCTGGTGCATATCGGCAGTTGCATTGCTTCATTACTTGGGCAAGG
AGGGCCTGATAATCACCGTATAAAATGGCAGTGGCTTCGCTACTTCAACA
ATGACCGTGATCGCCGTGATCTCATCACATGTGGCTCTTCCTCAGGCGTA
TGTGCAGCTTTCAGAGCGCCAGTGGGTGGTGTCCTGTTTTCTTTAGAAGA
GGTAGCAACATGGTGGAGAAGTGCACTTCTCTGGAGAACTTTCTTCAGCA
CAGCAGTTGTGGTGGTGGTGCTCAGAGCTTTTATTGAAATATGCACTTCT
GGGAAATGTGGGCTTTTTGGTACAGGAGGGCTTATCATGTTTGATGTGAG
CAATGTTCCAGTTAGATATCATGTAATGGATATCATTCCTGTAACTTTAA
TTGGCATAATTGGTGGAATTTTGGGAGGCCTCTACAATCACATTCTGCAT
AAAGTTCTCAGACAAAAAAAAAAATTCTCCGAGTTCTAAATTGCAGTGTG
CACTAATAATTGATCATAGGAGAGGTAAAGTTCATTGCTCGAACGTAATT
CAAAATTTCCCCCTTTTTT
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