CX045938 | Citrus Genome Database

Overview


Name	CX045938
Unique Name	CX045938
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	737

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX045938 vs. ExPASy Swiss-Prot

BLAST of CX045938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97


Match Name	E-value	Identity	Description
UBIQ_WHEAT	6.982e-35	97.37	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	6.982e-35	97.37	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	6.982e-35	97.37	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	6.982e-35	97.37	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	6.982e-35	97.37	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	6.982e-35	97.37	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	6.982e-35	97.37	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	6.982e-35	97.37	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	6.982e-35	97.37	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	6.982e-35	97.37	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_4H05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-4H05-O10-1-7.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX045938 ID=CX045938; Name=CX045938; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTGCACATTAAACATGTATTTATTCAAGAAAAAAA
TTCTTAAATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAAA
AACAGAGTTCAACTACCACAACCAAAATAAACTTCAAATAGTTATTTAAG
CCATTTCACCAATAGCAAGCAAACATTAACCAAGACAAACCGAAGCAAAT
AAAACACACACACACCCAGATGACCAAACTCAAAAACCTCCACGGAGACG
GAACACAAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAG
TCCTTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCT
GGGGGAATCCCCTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATTGT
GTCCGAACTCTCAACCTCCAATGTGATGGTTTTCCCAGTGAGTGTCTTCA
CAAAAATCTGCATACCACCACGGAGGCGAAAAACCAAGTGAAGAGTGGAT
TCTTTCTGGATGTTATAGTCTGCAAGAATCCTTCCATCTTCAAGCTGCTT
TCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTT
GAATTTTTGCTTTCACGTTGTCGATGGTGTCAGAACTTTCAACCTCAAAA
GTAATTGTTTTTCCGGTGAGGGTTTTCACAAAGATCTGCATGCCACCACG
GAGACCAAGCACCAAATGGAAGGTTGACTCCTTCTGG