CX045930

Overview
NameCX045930
Unique NameCX045930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX045930 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 2 
Query:  116 FTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXXCCGERVGKVKDPYGFTWL 505
            FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   23 FTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CX045930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH1.220e-1540.15Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_4H01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-4H01-O2-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX045930 ID=CX045930; Name=CX045930; organism=Citrus sinensis; type=EST; length=859bp
TAGGGTCAGGTTTCTTTCCTTTGTCTAGACTCCAAAACTCTCTCGCTCAA
TGGCTGATGTCCAGGAGGTTCAGAATGGAGCTGCGCCGGAGAAGGCTCCT
GCCACCGCGGCCAGCTTCACGGGGATGAAGCCGCAGTTGCTTGTGGAAGC
ACCGAAGGCTACTGACGCTGTTCAGTTCTACAAGACCGCGTTTGGTGCTG
TGGAGATCGGCCGTAGCGTGGAAACCAAACGCAAGGCTGAACAGGAGCTC
CCACTCATCTCCTGCGCTCAACTGGAGATTGCCGGCTCCACCTTCCTTGT
CTCTGACGTTTCCGGTGACTCTGCTGCTGCACAGACCGTGGGGACCGGAT
GCGTGCTTTGCTTGGAGACCGAGGACGTGGAGGCTGCCGTCGCCAAGGCT
GTGAGTGCTGGAGCTGTTGCTGAGGGTGAGCTCGCTGAAGGCAACGGCGC
GTGTTGTGGAGAGCGCGTGGGAAAGGTCAAAGATCCTTATGGCTTCACTT
GGCTCATTTGCTCCCCGGTCAAGAAGTGCGCTGGCGTGGAAGCTTAAGAG
CCGCCTGATCTGATGATCTTTAGATATTGATCTACTATCACATAACTCTC
TTTTGTCGTTCGTCTTTTCTGCTGTGGGTTTATAGCTCTAGGCTTTTTTA
GTATTTCGGATATCTTGATGATATTGCTGAACGTTGATCATGATGAAGGA
TGTTTTTGATTAATTTTGAAGGAACTGACAGCTGGCAGTTATAGACTTCT
TGCTACTCTTATTATCAATTTATCATCTTCTATTTTGCTAGTAATATCAT
CATTAATTCTAGTGATAACTATCCCTTCTTTGTGGAGGGTAAGATAGACT
TTTAAACGT
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