CX045920

Overview
NameCX045920
Unique NameCX045920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX045920 vs. ExPASy Swiss-Prot
Match: KING1_ARATH (SNF1-related protein kinase regulatory subunit gamma 1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 8.687e-77
Identity = 154/245 (62.86%), Postives = 172/245 (70.20%), Query Frame = 3 
Query:   81 EAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFP-PPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQXXXXXXXXXXXXXXXXXXVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQXXXXXXXXXXXXXXXXXXXIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMS 812
            EA+LGM+VEDLWD  +PQLSP EKLNACFESIPV AFP    SQ IEI+SDTSLAEAV+ L++ ++LSAPVVDVDAPEDASWIDRYIGIVEF GI VW+LHQ                   NG S       L    +++TSGNFFE LT+SE YKNTKVRDI+G+FRWAPFLALQ                   IPVVDLG   I+NIITQS VIHMLAECAGL WFE WG K LSE+GLPIMS
Sbjct:   25 EAKLGMRVEDLWDEQKPQLSPNEKLNACFESIPVSAFPLSSDSQDIEIRSDTSLAEAVQTLSKFKVLSAPVVDVDAPEDASWIDRYIGIVEFPGIVVWLLHQLEPPSPRSPAVAAS-----NGFSHDFTTDVLDNGDSAVTSGNFFEVLTSSELYKNTKVRDISGTFRWAPFLALQKENSFLTMLLLLSKYKMKSIPVVDLGVAKIENIITQSGVIHMLAECAGLLWFEDWGIKTLSEVGLPIMS 264
The following BLAST results are available for this feature:
BLAST of CX045920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KING1_ARATH8.687e-7762.86SNF1-related protein kinase regulatory subunit gam... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_4G07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-4G07-M14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX045920 ID=CX045920; Name=CX045920; organism=Citrus sinensis; type=EST; length=814bp
GATCATTCGTATTGATGGCGAGTGTGCAATTACAGAGACAAGGGAGTAGT
CCAAGGCAACAGGATAGTCCTCGGAGTCCAGAGGCGCAGCTGGGGATGAA
AGTGGAGGATTTGTGGGACGTTTTGGAACCACAGCTGAGTCCCACGGAGA
AGCTCAACGCCTGCTTTGAAAGCATCCCTGTTGAGGCTTTCCCTCCTCCG
CCTTCACAAGTGATTGAGATAAAATCGGACACCAGTCTAGCTGAAGCGGT
TGAAATACTGGCCCAACACAGAATTCTTAGTGCTCCTGTAGTGGATGTTG
ATGCACCCGAGGATGCTAGTTGGATAGACAGATACATTGGCATTGTTGAG
TTTGCAGGAATTGCTGTATGGATTTTGCATCAGTCAGAACCTCCTTCTCC
AAGGAGTTCATCCCCTAGTTCTGCGTTGGCTGCAGCAGTTAATGGCATGT
CTAAGGCTGCTCTATTTAAGGATTTAGGCCCTGAATCTGCTTCAATGACT
TCCGGAAACTTTTTTGAAGCTTTGACTACTTCTGAATTCTATAAGAACAC
TAAGGTACGAGACATCGCAGGGTCATTTCGCTGGGCTCCATTCCTTGCTC
TGCAGAAATCCAACTCCTTCTTGACCATGCTTCTGTTGCTTTCAAAGTAC
AAAATGAAGAGCATTCCTGTAGTTGATTTGGGTGAAGGGACGATTGATAA
CATTATCACCCAGTCTTCTGTTATTCACATGTTAGCTGAGTGTGCTGGCC
TTGAATGGTTTGAAAGCTGGGGAAAGAAGAAGCTATCTGAAATTGGTCTT
CCCATAATGTCAGC
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