EY667080

Overview
NameEY667080
Unique NameEY667080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY667080 vs. ExPASy Swiss-Prot
Match: PSME4_HUMAN (Proteasome activator complex subunit 4 OS=Homo sapiens GN=PSME4 PE=1 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 7.546e-17
Identity = 26/77 (33.77%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:  316 SQSVASRHGXXXXXXXXXXXXPYDMPSWLPEHVTLLARFSGEATPVKSTVTKAVAEFRRTHADTWNLQKDSFTEEQL 546
            S  +  RH             PYD+P+W+P+ +  L+    +  P++ TV K ++ FRRTH D W   K  FT++QL
Sbjct: 1753 SAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQL 1829

HSP 2 Score: 47.3654 bits (111), Expect = 7.546e-17
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 3 
Query:    9 VSTILSSADDSNWRTRSATLTYLRTFMYRHTFILPDTEK--KDIWNTVEKLLTDNQVEVREHADCTCSGRL 215
            +  +  +A  S+W  R   LTYL+T ++ + FI  + E   KDI   V  LL D Q+EVRE A  T SG L
Sbjct: 1643 LQVLKQTARSSSWHARYTVLTYLQTMVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLL 1713
[Close]
BLAST of EY667080 vs. ExPASy Swiss-Prot
Match: PSME4_MOUSE (Proteasome activator complex subunit 4 OS=Mus musculus GN=Psme4 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.153e-16
Identity = 26/77 (33.77%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:  316 SQSVASRHGXXXXXXXXXXXXPYDMPSWLPEHVTLLARFSGEATPVKSTVTKAVAEFRRTHADTWNLQKDSFTEEQL 546
            S  +  RH             PYD+P+W+P+ +  L+    +  P++ TV K ++ FRRTH D W   K  FT++QL
Sbjct: 1753 SAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQL 1829

HSP 2 Score: 45.8246 bits (107), Expect = 2.153e-16
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 3 
Query:    9 VSTILSSADDSNWRTRSATLTYLRTFMYRHTFILPDTEK--KDIWNTVEKLLTDNQVEVREHADCTCSGRL 215
            +  +  +A  S+W  R   LTYL+T ++ + FI  + E   KDI   +  LL D Q+EVRE A  T SG L
Sbjct: 1643 LQVLSQTARSSSWHARYTVLTYLQTMVFYNLFIFLNNEDAVKDIRWLIICLLEDEQLEVREMAATTLSGLL 1713
The following BLAST results are available for this feature:
BLAST of EY667080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSME4_HUMAN7.546e-1733.77Proteasome activator complex subunit 4 OS=Homo sap... [more]
PSME4_MOUSE2.153e-1633.77Proteasome activator complex subunit 4 OS=Mus musc... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-027-H07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY667080 ID=EY667080; Name=EY667080; organism=Citrus sinensis; type=EST; length=788bp
AGAAAGCTGTTAGCACAATTCTATCTTCTGCAGATGATTCTAACTGGAGA
ACAAGATCTGCTACTCTGACGTATCTGCGAACTTTTATGTATAGGCACAC
GTTCATACTCCCAGACACAGAAAAAAAAGATATTTGGAATACAGTGGAGA
AGCTTCTAACGGACAATCAAGTGGAGGTAAGGGAGCATGCTGACTGCACT
TGTTCTGGCAGGCTTAATGAAGGGGGGTGATGAAAAGTTAGCCAAGGACT
TCCGCGATAGAGCTTACAAGGAGGCCAATATGATTCAAAGGCAGAATAAG
AGAAATTCGAGCTTCAGTCAGTCAGTAGCTTCTAGACATGGTGCTGTACT
TGCTTTGGTTGCTTCTGTGTTATCAGTCCCTTACGATATGCCCAGTTGGT
TGCCTGAGCATGTTACATTATTGGCACGTTTTAGTGGGGAGGCGACACCC
GTTAAATCTACAGTGACAAAAGCAGTTGCAGAATTCCGTCGTACTCATGC
TGACACGTGGAATCTTCAGAAAGATTCATTTACAGAAGAGCAACTAGAGG
GTTTTGGCTGATACATCCTCATCATCATCATATTTTGCTTGATATGCCAC
CTGGAATAGAAACACAATGGATAGGAAATATATTGAATTTTATAATAATT
TTACCTTAGTTAATGGTTGAAAAAAAAAAAAAAGGGGGGGCCGTTTAAAA
GGATCCAACTTTACCTAACCGTGGCTGGCAACGGCCTAAGTCTTTCTTAT
AGGGGCCCCTAAATTTCATTTCCTGGGCCGCCGTTTTA
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