DN617660

Overview
NameDN617660
Unique NameDN617660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.002e-12
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAK-EIAKSINEDTILS 743
            +++ +A++   +A+ EAR+L +   GTE  L+GIL EGT   AK L++ GITL   R E   ++G+     F     P T +A++ L+ A  E  +      + T HLLLG+  E E    ++L  LG +  K +  I + I E + +S
Sbjct:   35 RFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEVEKIIGRGS--GFVAIEIPFTPRAKKILELAIEES-RILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRSNIIRMIGETSEVS 180          
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = 3
Query:  300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAK-EIAKSINED 731
            +++ +AI+   +A+ EAR+L +   GTE  L+G++ EGT   AK L++ GI L   R E   ++G+     F     P T +A+R L+ +  E  + G +  I + HLLLG+  E E    ++L  LG +    + ++ + + E+
Sbjct:   44 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGEN 185          
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLG 683
            +++ +AI+   +A+ EAR+L +   GTE  L+G++ EGT   AK L++ GI L   R E   ++G+   F       P T +A+R L+ +  E  + G +  I + HLLLG+  E E    ++L  LG
Sbjct:   96 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFI--AVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 220          
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLG 683
            +++ +AI+   +A+ EAR+L +   GTE  L+G++ EGT   AK L++ GI L   R E   ++G+     F     P T +A+R L+ +  E  + G +  I + HLLLG+  E E    ++L  LG
Sbjct:   94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 218          
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAK 704
            +++ +AI+   +A+ EAR+L +   GTE  L+G++ EGT   AK L++ G+ L   R E   ++G+     F     P T +A+R L+ +  E  + G +  I T HLLLG+  E E    ++L  L  +  K +
Sbjct:    4 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGTEHLLLGLIREGEGVAARVLENLALDLTKVR 135          
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLG 683
            +++ +AI+   +A+ EAR+L +   GTE  L+G++ EGT   AK L++ GI L   R E   ++G+     F     P T +A+R L+ +  E  + G +  I + HLLLG+  E E    ++L  LG
Sbjct:   94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSQEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 218          
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 42/136 (30.88%), Postives = 77/136 (56.62%), Query Frame = 3
Query:  300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKE 707
            +++ RA +  A+A+ EA +L + N GTE  L+G++ EG    AK L+A G+   K+++E  +L+G+        +    T +A++ ++ + +E  K G S  + T H+LLG+  E E    ++L  LG +  KA++
Sbjct:    5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQTIHYTPRAKKVIELSMDEARKLGHS-YVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQ 136          
The following BLAST results are available for this feature:
BLAST of DN617660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CLPC_CYACA9.002e-1232.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA1.176e-1130.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC1.176e-1133.59ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC1.536e-1133.59ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH2.005e-1131.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA3.421e-1133.59ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_BACSU7.621e-1130.88Negative regulator of genetic competence clpC/mecB... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01I07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617660 ID=DN617660; Name=DN617660; organism=Citrus sinensis; type=EST; length=770bp
ATACTAAAAATCTTCTTCCTTGAACTCGAAGCATCGTCTCTTCGACGGAC
ATGGCCGCCAATACGTTCTCATTTCCCGCAAATTTACTTCGTTACTCTCA
GTCTTTCGACGCAAAACGCAGTTCAGCTCCTTCGTTTCTTCCGTCGAGTT
CTATGTTCGGTAACAAGCTCCTAATTCGACCGCAGTTGAGCTCGAGCCGT
TTTGTTACAAAATATCATCGTAGCTCAGCGACGGCGACGGTGTCGTTTAG
TCTACCAACAACAGTAAAACCGGAGACGGCCTCTCCCGATAAAATTCCAA
AGTGGTCGGCGAGGGCGATAAGGTCATTTGCTATGGCGGAGCTGGAGGCA
AGGAAGCTCAAGTATCCTAACACTGGGACTGAAGCGTTTCTAATGGGCAT
TTTGGTTGAGGGAACGAGTACAACGGCTAAGTTTTTGAGGGCTAATGGAA
TAACACTTTTCAAGGTGCGGGAAGAGACCTTAAACTTACTTGGAAAATCT
GATCTGTTCTTTTTCAGCCCTGAGCGCCCTCCATTGACTGAACAAGCTCA
AAGGGCTCTTGATTGGGCCTTCAATGAGAAGCTAAAGTCAGGTGAGAGTG
GGGAAATAACCACAAATCATTTGCTTCTTGGTATTTGGTCAGAAAAAGAA
TCAGCAGGTCACAAGATTCTGGCCACTTTAGGTTTTAATGATGAGAAAGC
CAAAGAAATCGCCAAATCTATAAATGAAGATACCATTCTGAGCTTTAAGT
AGGGGATTCAAAGATTTTCT
back to top