DN617660
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.002e-12 Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 3 Query: 300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAK-EIAKSINEDTILS 743 +++ +A++ +A+ EAR+L + GTE L+GIL EGT AK L++ GITL R E ++G+ F P T +A++ L+ A E + + T HLLLG+ E E ++L LG + K + I + I E + +S Sbjct: 35 RFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEVEKIIGRGS--GFVAIEIPFTPRAKKILELAIEES-RILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRSNIIRMIGETSEVS 180
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11 Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = 3 Query: 300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAK-EIAKSINED 731 +++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E ++G+ F P T +A+R L+ + E + G + I + HLLLG+ E E ++L LG + + ++ + + E+ Sbjct: 44 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGEN 185
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11 Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 3 Query: 300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLG 683 +++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E ++G+ F P T +A+R L+ + E + G + I + HLLLG+ E E ++L LG Sbjct: 96 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFI--AVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 220
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11 Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 3 Query: 300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLG 683 +++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E ++G+ F P T +A+R L+ + E + G + I + HLLLG+ E E ++L LG Sbjct: 94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 218
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11 Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 3 Query: 300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAK 704 +++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ G+ L R E ++G+ F P T +A+R L+ + E + G + I T HLLLG+ E E ++L L + K + Sbjct: 4 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGTEHLLLGLIREGEGVAARVLENLALDLTKVR 135
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11 Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 3 Query: 300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLG 683 +++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E ++G+ F P T +A+R L+ + E + G + I + HLLLG+ E E ++L LG Sbjct: 94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSQEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLG 218
BLAST of DN617660 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11 Identity = 42/136 (30.88%), Postives = 77/136 (56.62%), Query Frame = 3 Query: 300 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKE 707 +++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E +L+G+ + T +A++ ++ + +E K G S + T H+LLG+ E E ++L LG + KA++ Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQTIHYTPRAKKVIELSMDEARKLGHS-YVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQ 136 The following BLAST results are available for this feature:
BLAST of DN617660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617660 ID=DN617660; Name=DN617660; organism=Citrus sinensis; type=EST; length=770bpback to top |