CX045456

Overview
NameCX045456
Unique NameCX045456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX045456 vs. ExPASy Swiss-Prot
Match: AEEP_BACSU (L-Ala-D/L-Glu epimerase OS=Bacillus subtilis GN=ykfB PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.698e-16
Identity = 57/158 (36.08%), Postives = 83/158 (52.53%), Query Frame = -1
Query:  429 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKS-GLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 899
            EAV  + K+ D G+   L EQPVH+DD +GL  V++ A DT    ++ADES  +     +V+Q   A ++NIKL K G +   + I A  ++ G+  M+  MIET+L    A H AA    I   + + P +L  D F GG   SG+  +     G G
Sbjct:  200 EAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTD-ATDT---PIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353          
BLAST of CX045456 vs. ExPASy Swiss-Prot
Match: AEEP_THEMA (L-Ala-D/L-Glu epimerase OS=Thermotoga maritima GN=TM_0006 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 51/139 (36.69%), Postives = 74/139 (53.24%), Query Frame = -1
Query:  483 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVG 899
            EAVE    +   G+   ++EQPV R+D  GL     F R      V ADES R+  DV ++++E     VNIKL K G+   L I++    SGL LMI  M E+ L    ++H A G G  ++ +L++  +L E+ F G
Sbjct:  197 EAVEFARAVYQKGIDIAVYEQPVRREDIEGL----KFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRG 331          
BLAST of CX045456 vs. ExPASy Swiss-Prot
Match: AEEP_CLOAB (L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum GN=CA_C0192 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 52/153 (33.99%), Postives = 79/153 (51.63%), Query Frame = -1
Query:  444 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN 899
            EA+  L ++ + G+   L EQPV   +  GL  V+    D   I V+ADES  S  D  +VM+     ++NIKL K G +   L+I       G+  M+  M+E +++   A+HLAA    I  ++L+ P L S D  VG     GA+Y+ +N
Sbjct:  199 EAIRALNEIENEGLKIELVEQPVKAWNLEGLKMVT----DNVNIPVMADESVFSPKDAARVMEMRACDLINIKLMKTGGIHNALKICALAEVYGMECMLGCMLEGKVSVTAAVHLAAAKRIITKIDLDGPVLCSRDDVVG-----GAMYDNSN 342          
The following BLAST results are available for this feature:
BLAST of CX045456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AEEP_BACSU7.698e-1636.08L-Ala-D/L-Glu epimerase OS=Bacillus subtilis GN=yk... [more]
AEEP_THEMA1.313e-1536.69L-Ala-D/L-Glu epimerase OS=Thermotoga maritima GN=... [more]
AEEP_CLOAB3.027e-1233.99L-Ala-D/L-Glu epimerase OS=Clostridium acetobutyli... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_2A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-2A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX045456 ID=CX045456; Name=CX045456; organism=Citrus sinensis; type=EST; length=899bp
CTTTTTTTTTCCCGATCCAAAATAAAATAAAAAAATAAATGAGATTATGA
TTCATATTCCACACTTCCATTACAATATAAATTAATATTCTATTCTCATC
TCACACTCCTAATTCGAGGATTCCCACTTTAATCTGTGGAGTAAACGCTG
CCTTAGAGGTACAAATTATTAGACTTATATTTCTACTTTTCAGAAGAATA
AGAAGAAGCTTACGATTCTTTTAAAACTAATTGTGATCAAGGGCTACATA
AGTGATCCCTTGAAAACTGAGAATTTGCATCCCCGATGGCATCGATCCAA
TTCTTTGATACGTGCATAATTTTGTCATATTTTCATGTTCAGTAATAAAG
CTTGGACCCTGAGATGAAATTTGTCAGCTTGGAAGAATAGTTTATCCATC
AGGAAACAATAGTCCATTTTAAGAAACCTCCTTGACCTCTGGCATTAGTG
AAGTTGTAGATGGCCCCAGAAACTTCGCAACCCCCCACGAATGGATCCTC
AGACAGCAGAAAGGGCGTATTCAGATTAACATATTTGATGCATCCGAGAC
CAGCAGCGAGATGGAGAGCGAAGCCTGTGGCAAGCCTTGTCTCGATCATA
CCATCAATCATAAGATGCAAGCCTGATTTTCTTGTGGCCTTAATAATTTG
AAGGGTGCCCAGGACCCCAAACTTGGCGAGTTTAATATTAACAACACTTG
CAAGGTTTTCCTGCATAACTTTCTGAACATCATTCAAACTCCTACAACTT
TCATCTGCAACGACACTTATGCCATACGTGTCTCTAGCAAAATTACTGAC
ATCATGAAGACCACTCCAATCATCTCTATGAACTGGTTGTTCAAAGAGAA
CAGGAATTACTCCCATGTCATTTAACTTTCCAAGGACTTCGACTGCTTC
back to top