CX045394

Overview
NameCX045394
Unique NameCX045394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX045394 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.082e-30
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = -2 
Query:  281 KGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKVPEDFAYKIRSLPNVKWVLPDSYLCHGESGYGGEPFVDGEVVPYNDKYHADWIWN--QHNNKLKSVPCPREARRKR 637
            +G P RDEI++ Y+KTLA  +G E++A+  IYSVST+ YYAFG  V ED ++K++ L NV+WVLPDSYL      YGGEPF+DG+ VPY+ KYH +WI N  + N + +    PR   R R
Sbjct:  108 QGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNNDRSR 228
[Close]
BLAST of CX045394 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.666e-17
Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = -2 
Query:  374 PPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKVPEDFAYKIRSLPNVKWVLPDSYLCHGESGYGGEPFVDGEVVP 628
            P R+++++ Y+ TLA+ LG  E+AKK++Y+ ST  Y  F C V E+ + K + LP V WVLPDSY+      YGG+ +V+GE++P
Sbjct:  101 PTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIP 185
The following BLAST results are available for this feature:
BLAST of CX045394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UMP1_ARATH3.082e-3051.24Uncharacterized protein At3g15000, mitochondrial O... [more]
DAG_ANTMA6.666e-1744.71DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_22F04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-22F04-L8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX045394 ID=CX045394; Name=CX045394; organism=Citrus sinensis; type=EST; length=641bp
TTTTTTTTTTTTTTTTTAAATACCAAAAAAAATTGACATTAAAATTTGAA
CGGCAACAACTGATCATGGATTTTTACATGGATAAGCAGGTTGAGAATTC
AAAAACCTAATCGAGCAACCCAGGAAAAAAATTCTCTACAAGGTTGAAAA
ATCAATATCTGTGTTGGATGGCATTGCTTCTTCTCATCTGTGTTTCAACA
GCAGGTGAGCTTCTAAGTGTGACCTTGGATGGCAAAGTCCAAGTTCAGGT
CCATGCTTTCAGTTGCATTTAATTTTTCTTTCGTTTTCTCCTGGCTTCCC
TAGGACAGGGTACGCTCTTTAATTTATTATTGTGTTGGTTCCATATCCAG
TCTGCATGATACTTGTCGTTGTATGGAACAACCTCCCCATCAACAAATGG
CTCTCCTCCATAGCCACTTTCACCATGACACAAATAAGAATCCGGCAGTA
CCCATTTCACATTTGGTAAGGATCTGATCTTATAAGCAAAATCTTCAGGA
ACTTTGCAACCAAATGCATAGTAGTATTTAGTTGAAACTGAATATATCGA
TTTCTTTGCATCCTCTTCGCAGCCCAAAGCCGAAGCTAGAGTCTTAACGT
AACCATTAACGATCTCATCTCGTGGTGGGTATCCTTTGCCT
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