DN617627

Overview
NameDN617627
Unique NameDN617627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1484 contig Csv1_Contig1484:129..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617627 vs. ExPASy Swiss-Prot
Match: NDUAC_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.834e-54
Identity = 94/119 (78.99%), Postives = 104/119 (87.39%), Query Frame = -2
Query:  192 QTKLHNRGATLVGVDKFGNKYYQKL-DEQFGRHRWVEYAEKSRYNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHKENLSGEGEEFIYHSKGHFLNPEQRDWSRYQPWEPSKKE 545
            QTK+HN GATLVGVDKFGNKYYQKL D Q+GRHRWVEYA K RYNASQVP EWHGWLH +TDHTGDELL LKPKRYGLEHKEN SGEG+ +IYHSKGH LNP Q++W+RYQ W P+K +
Sbjct:   41 QTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKTQ 159          
BLAST of DN617627 vs. ExPASy Swiss-Prot
Match: NDUAC_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus GN=NDUFA12 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.520e-15
Identity = 42/95 (44.21%), Postives = 52/95 (54.74%), Query Frame = -2
Query:  264 RGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHKENLSGEGEEFIYHS 527
            R  TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLHCMTD           K     HK NLSG  ++++ +S
Sbjct:   34 RVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGTPQQYVPYS 128          
BLAST of DN617627 vs. ExPASy Swiss-Prot
Match: NDUAC_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Mus musculus GN=Ndufa12 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 41/95 (43.16%), Postives = 51/95 (53.68%), Query Frame = -2
Query:  264 RGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHKENLSGEGEEFIYHS 527
            R  TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLHCMTD           K     HK N+S   E+++ +S
Sbjct:   34 RIGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPTARKFIWTNHKFNVSATPEQYVPYS 128          
BLAST of DN617627 vs. ExPASy Swiss-Prot
Match: NDUAC_CAEEL (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 49/119 (41.18%), Postives = 65/119 (54.62%), Query Frame = -2
Query:  186 RGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKS--RYNASQVPPEWHGWLHCMTDHTGDELLMLKP---KRYGLEHKENLSGEGEEFIYHSKGHFLNPEQRDWSRYQPWEPSKKE*F 527
            R  TLVG D FGN+YY+       R+RWVE+ +K    Y+A+QVPPEWH WLH    H  D+   +KP   + + LEHKEN S      IY  K +   P     ++ Q W+P +K  F
Sbjct:   39 RVGTLVGSDNFGNRYYENNAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLH----HITDDAPSVKPPPTQDWVLEHKENTS------IYADKKYV--PYSTTRTKIQGWQPGEKPQF 145          
BLAST of DN617627 vs. ExPASy Swiss-Prot
Match: NDUAC_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.287e-14
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = -2
Query:  264 TLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHKENLSGEGEEFIYHS 518
            TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH MTD       +   K     HK N++G  E+++ +S
Sbjct:   37 TLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNMTGTPEQYVPYS 128          
BLAST of DN617627 vs. ExPASy Swiss-Prot
Match: NDUAC_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = -2
Query:  264 TLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHKENLSGEGEEFIYHS 518
            TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH MTD       +   K     HK N++G  E+++ +S
Sbjct:   37 TLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128          
BLAST of DN617627 vs. ExPASy Swiss-Prot
Match: NDUAC_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens GN=NDUFA12 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = -2
Query:  264 TLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHKENLSGEGEEFIYHS 518
            TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH MTD       +   K     HK N++G  E+++ +S
Sbjct:   37 TLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128          
BLAST of DN617627 vs. ExPASy Swiss-Prot
Match: NDUAC_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.890e-14
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = -2
Query:  264 TLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHKENLSGEGEEFIYHS 518
            TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH +TD       +   K     HK N++G  E+++ +S
Sbjct:   37 TLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHHWLHSITDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128          
BLAST of DN617627 vs. ExPASy Swiss-Prot
Match: NDUAC_DICDI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = -2
Query:  291 TLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSRYNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHKENLSG 518
            TLVGVDK GN+YY+   E +GRHRWVEY +    + + +PPE+H W+H ++D    E+L   P  Y   H  N +G
Sbjct:   33 TLVGVDKVGNRYYENRQEIYGRHRWVEYGDYKSNDPTTIPPEYHSWIHHVSDKLPSEMLPFSP-TYKRPHIANPTG 107          
The following BLAST results are available for this feature:
BLAST of DN617627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NDUAC_ARATH2.834e-5478.99Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
NDUAC_BOVIN1.520e-1544.21NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_MOUSE9.853e-1543.16NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_CAEEL9.853e-1541.18Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
NDUAC_GORGO1.287e-1442.39NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_PANTR1.681e-1442.39NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_HUMAN1.681e-1442.39NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_PONPY4.890e-1441.30NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_DICDI8.341e-1444.74NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01H13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617627 ID=DN617627; Name=DN617627; organism=Citrus sinensis; type=EST; length=546bp
GACATTTCATTAATGTGGTAAGCAAATGCAAAAATTCTATTGCTTCAAAC
AAGTACAAGACATTTCATTAATGTGGTAAGCAAATGCAAAAATTCTATTG
CTTCAAACAAGTACAAGACATTTTATTAATGGAAACGGCAGCCAAAATCC
CAGATTTTGCAAGTTAACATGGGAAGTTGATGAAGAAATTACTCTTTCTT
GGAGGGTTCCCATGGTTGGTACCTAGACCAGTCTCTCTGCTCTGGATTGA
GGAAATGTCCTTTGGAATGATAGATAAACTCCTCACCCTCTCCCGATAAA
TTTTCCTTGTGCTCAAGTCCGTATCTCTTCGGTTTCAGCATCAGAAGCTC
ATCTCCTGTGTGATCAGTCATGCAGTGCAGCCAACCGTGCCATTCTGGTG
GCACCTGGGAAGCATTGTAGCGACTCTTCTCTGCATATTCAACCCACCTG
TGTCTTCCAAATTGCTCGTCAAGTTTCTGATAATACTTGTTACCAAATTT
ATCAACTCCAACAAGCGTTGCCCCTCTATTATGTAACTTGGTTTGC
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