DN617406

Overview
NameDN617406
Unique NameDN617406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5719 contig Csv1_Contig5719:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617406 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.677e-16
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:   25 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATR 291
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKV-PQPLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSK 79

HSP 2 Score: 27.7202 bits (60), Expect = 4.677e-16
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2 
Query:  293 VSEEVFDKPTHPNSPTVYD 349
            +  +VFD P  PNSPTVYD
Sbjct:   81 MGNQVFDSP-QPNSPTVYD 98
The following BLAST results are available for this feature:
BLAST of DN617406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN4.677e-1646.07Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01C16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617406 ID=DN617406; Name=DN617406; organism=Citrus sinensis; type=EST; length=610bp
AGCAGCTAAATTGTAAATTTAAAGATGCTAGAGAAGCTTTGGGACGATGT
TGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCA
CCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCG
GGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTC
GACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGT
GGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCAGA
AGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACT
GCAACCAAATAAAGGCTAAGAGGAAGGAGGAAAACGTGGCACTCTGTCTC
ATGGGCGCGTTGAAATAGATCTTTGTCTTATTCAGTAATGATCACTCAAT
TCACACTCTTTTGTGAATCCCTGCCAGTTCTTCCTTAGTTAAAGCCAAAT
GATGTAATAAATAATATATTTTGTATTATGTAGTGATCATGGATAAGATT
AGATCGTACTATAGCTAGGGCTGTTGGATCTGTTTATTTTGCGGTGGATG
ATTAAAGCCT
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