EY662345

Overview
NameEY662345
Unique NameEY662345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY662345 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.371e-34
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 2
Query:   11 NGEIQEPFGGIMIECDTDMPMEHVISEDDAECCICLSAYDDGTELRELPCRHHFHCSCLDKWLYINSTCPLCKFNILKMSN 253
            N E Q    GIM EC TD P+EH + ++DAECCICLSAY+DGTELRELPC HHFHCSC+DKWLYIN+TCPLCK+NILK SN
Sbjct:  322 NDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSN 402          
BLAST of EY662345 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.181e-33
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 2
Query:   35 GGIMIECDTDMPMEHVISEDDAECCICLSAYDDGTELRELPCRHHFHCSCLDKWLYINSTCPLCKFNILKMSNERGSEEV 274
            GG+M EC TD P+EH +  +DAECCICLSAY+D TELRELPC HHFHC C+DKWLYIN+TCPLCK+NILK SN    EEV
Sbjct:  302 GGVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGEEV 381          
BLAST of EY662345 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.333e-30
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 2
Query:    2 EKVNGEIQEPFGGIMIECDTDMPMEHVISEDDAECCICLSAYDDGTELRELPCRHHFHCSCLDKWLYINSTCPLCKFNILKMSN 253
            EK++G+ +    GIM EC TD P+E  +S +DAECCICL  Y+DG ELRELPC HHFHC+C+DKWL+INS CPLCKFNILK +N
Sbjct:  308 EKLSGKAR----GIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILKNAN 387          
BLAST of EY662345 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.280e-12
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 2
Query:   74 EHVISEDDAECCICLSAYDDGTELRELP-CRHHFHCSCLDKWLYINSTCPLCKFNILKMSNERGSEE 271
            E  I   D EC ICL+  +D   +R LP C H FH  C+D WLY ++TCP+C+ N+   SN+ G E+
Sbjct:  113 ESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDED 179          
BLAST of EY662345 vs. ExPASy Swiss-Prot
Match: RF12A_XENLA (E3 ubiquitin-protein ligase rnf12-A OS=Xenopus laevis GN=rnf12-A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.006e-12
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 2
Query:   89 EDDA--ECCICLSAYDDGTELRELPCRHHFHCSCLDKWLYINSTCPLCKFNILKMSN 253
            E+DA   C +C++ Y +G +LR+LPC H +H  C+D+WL  NSTCP+C+  +L  SN
Sbjct:  561 ENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVASN 617          
BLAST of EY662345 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.006e-12
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   74 EHVISEDDAECCICLSAYDDGTELRELP-CRHHFHCSCLDKWLYINSTCPLCKFNI 238
            E    E++ ECCICL  +++G +++ LP C H +HC C+D+WL   S+CPLC+ +I
Sbjct:   97 ERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSI 152          
BLAST of EY662345 vs. ExPASy Swiss-Prot
Match: ZNRF3_MOUSE (Zinc/RING finger protein 3 OS=Mus musculus GN=Znrf3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.536e-11
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 2
Query:   71 MEHVISEDDAECCICLSAYDDGTELRELPCRHHFHCSCLDKWLYINSTCPLCKFNILKMSNERGS 265
            ++ + S   ++C ICL  Y DG ELR +PC H FH  C+D WL  + TCP C+ NI++     G+
Sbjct:  279 LDTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGNPGA 343          
BLAST of EY662345 vs. ExPASy Swiss-Prot
Match: RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.536e-11
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 2
Query:   89 EDDA--ECCICLSAYDDGTELRELPCRHHFHCSCLDKWLYINSTCPLCKFNILKMSN 253
            E+DA   C +C++ Y +G +LR+LPC H +H  C+D+WL  NSTCP+C+  +L   N
Sbjct:  539 ENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGN 595          
BLAST of EY662345 vs. ExPASy Swiss-Prot
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 2.006e-11
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 2
Query:   89 EDDA--ECCICLSAYDDGTELRELPCRHHFHCSCLDKWLYINSTCPLCKFNILKMSN 253
            E+DA   C +C++ Y +G +LR+LPC H +H  C+D+WL  NSTCP+C+  +L   N
Sbjct:  563 ENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGN 619          
BLAST of EY662345 vs. ExPASy Swiss-Prot
Match: RNF12_XENTR (E3 ubiquitin-protein ligase rnf12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.620e-11
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 2
Query:   89 EDDA--ECCICLSAYDDGTELRELPCRHHFHCSCLDKWLYINSTCPLCKFNILKMSN 253
            E+DA   C +C++ Y +G +LR+LPC H +H  C+D+WL  NSTCP+C+  +L   N
Sbjct:  578 ENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVAGN 634          
The following BLAST results are available for this feature:
BLAST of EY662345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RING1_ARATH8.371e-3474.07E3 ubiquitin-protein ligase At1g12760 OS=Arabidops... [more]
RING2_ARATH3.181e-3372.50E3 ubiquitin-protein ligase At1g63170 OS=Arabidops... [more]
RING4_ARATH7.333e-3065.48E3 ubiquitin-protein ligase At4g11680 OS=Arabidops... [more]
ATL4O_ARATH5.280e-1244.78RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
RF12A_XENLA9.006e-1247.37E3 ubiquitin-protein ligase rnf12-A OS=Xenopus lae... [more]
ATL3D_ARATH9.006e-1244.64RING-H2 finger protein ATL3D OS=Arabidopsis thalia... [more]
ZNRF3_MOUSE1.536e-1141.54Zinc/RING finger protein 3 OS=Mus musculus GN=Znrf... [more]
RNF12_MOUSE1.536e-1145.61E3 ubiquitin-protein ligase RLIM OS=Mus musculus G... [more]
RNF12_HUMAN2.006e-1145.61E3 ubiquitin-protein ligase RLIM OS=Homo sapiens G... [more]
RNF12_XENTR2.620e-1145.61E3 ubiquitin-protein ligase rnf12 OS=Xenopus tropi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-043-B05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662345 ID=EY662345; Name=EY662345; organism=Citrus sinensis; type=EST; length=291bp
AGAGAAAGTTAATGGTGAGATTCAAGAACCTTTTGGAGGGATAATGATTG
AATGTGACACTGATATGCCAATGGAACATGTTATTTCTGAGGATGATGCT
GAGTGTTGCATCTGCCTTTCTGCTTATGATGATGGAACTGAGCTGCGGGA
ACTTCCTTGCCGACACCATTTCCACTGCTCTTGCTTAGACAAGTGGTTGT
ACATCAATTCTACATGTCCTCTTTGCAAATTCAACATTCTAAAAATGAGC
AATGAAAGAGGCAGCGAAGAGGTTTAGAAAGTCGTAGTTTT
back to top