CX044416

Overview
NameCX044416
Unique NameCX044416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX044416 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.970e-13
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 2 
Query:  557 QKSIADDEKEDGLISESELSGDHDDIENDLELSETETEPSRKTTPSKRKLSKLFKAIMDAPDISNNSTLTTYVEEGNDLSRAEISLAMANLRTRRMYGEALQ 862
            Q S + DE       E +LS D ++ E   EL   ET+ SRKT   ++K S+LFK I+ AP +S  S L  +VEEGN+++R EI+ AM  LR RRMYG ALQ
Sbjct:   91 QGSTSSDE------DEGKLSADEEEEE---ELDLIETDVSRKTV--EKKQSELFKTIVSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQ 181
[Close]
BLAST of CX044416 vs. ExPASy Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 61/198 (30.81%), Postives = 82/198 (41.41%), Query Frame = 2 
Query:  272 KSQGFGLGTARACCSRLEVLCGCVDDEAVILASPRAVSDGRLPLLRFYHQPHDCSIFFGGRRGLXXXXXXXXXXXXXXXXXXXXXXXTPATTDAVQKSIADDEKEDGLISESELSGDHDDIEN-DLELSETETEPSRKTTPSKRKLSKLFKAIMDAPDISNNSTLTTYVEEGNDLSRAEISLAMANLRTRRMYGEALQ 862
            +SQ   LG   A  S+L++  G   +  + + S   + D    L RFY      S    GRR L                       TP  T +        + EDG     E SGD  DIE  +LEL            P  ++ S++FKAI+    +S  S L  +VE+G D +R E   AM  LR RRM+G ALQ
Sbjct:   10 RSQSLRLGACNAVYSKLDIPLG---ERNIAIESNALIHDKHEALPRFYELSWSSST---GRRSLSSDAGAKTTGDDDDLEDKNVDLATPDETSS--------DSEDG----EEFSGDEGDIEGAELELH----------VPESKRPSEMFKAIVSVSGLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQ 179
The following BLAST results are available for this feature:
BLAST of CX044416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP135_ARATH1.970e-1347.06Pentatricopeptide repeat-containing protein At1g80... [more]
PPR44_ARATH1.844e-1130.81Pentatricopeptide repeat-containing protein At1g15... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_17D10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-17D10-H19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044416 ID=CX044416; Name=CX044416; organism=Citrus sinensis; type=EST; length=866bp
GTGGGAATAAATTAATCGGTTGAAATTACATAATAGATAATTGAGGTGTA
GACCGTCAACTGTTGGAGCCGGTTATCATCAGAGTTTTCTCCACCTCGTT
GTTTCCATTTTGATCTTCCTTCTCCTCTTCCTGACCATCAGCGTTTTCTC
AAGACCCCTCCTCCGACTTGGTCTCATCCTTATTGCTATCAGATTTCTTC
TCACCATCATCCGAATCAGATTCTCTTTCGTTTTCACCATGTGGGCACTC
CGTCGAGCTTCAAATCCTCTTAAGAGTCAGGGATTTGGACTTGGAACTGC
TCGTGCTTGTTGCTCAAGATTAGAAGTATTGTGTGGTTGTGTGGACGATG
AAGCTGTTATTCTTGCATCTCCAAGAGCAGTTTCTGATGGACGTTTACCT
TTATTGAGATTTTACCACCAGCCTCATGATTGTTCAATTTTCTTCGGTGG
GAGGCGTGGCCTTTCCTCACAAGCCGGTGCAGAAAGCAGTGGAGAAGAAG
ATGACTGGGAAGAAGGGTTTTCTGAACTTGAAACACCTGCTACTACTGAT
GCTGTGCAAAAGAGTATTGCCGATGATGAAAAGGAAGATGGATTAATTTC
TGAGTCTGAACTCTCTGGTGATCATGATGATATTGAAAATGATCTCGAGT
TATCAGAAACGGAGACTGAGCCAAGTAGGAAAACCACACCAAGTAAGAGG
AAGCTCTCAAAACTGTTCAAAGCCATCATGGATGCTCCAGATATTTCTAA
TAATAGTACTCTTACTACATATGTTGAAGAAGGCAATGATTTGAGCCGTG
CTGAGATTTCATTAGCCATGGCCAATCTTCGTACGCGTCGAATGTACGGG
GAAGCCTTGCAGTTCT
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