CX044414

Overview
NameCX044414
Unique NameCX044414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_THEEB (Protein grpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.917e-36
Identity = 73/158 (46.20%), Postives = 108/158 (68.35%), Query Frame = -2
Query:  347 NLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPS 820
            +LS+ +    ++ +R++ADF+NFRKRT++E+  L    +  V+  LL V+D+FE A+T I+ +TE EEKI+ SYQ +YKQLVE L  +GV  ++  G PFDP LHEA++RE + E  EG +IEE ++G+ LGDR+LR +MVKV+A P         P+
Sbjct:   89 SLSQVVEERNSQYIRLAADFENFRKRTQREKEELELQIKCSVIADLLPVVDSFELARTHIQTETEAEEKIHRSYQGVYKQLVECLKRIGVSAMQAKGKPFDPNLHEAVLREATNEHPEGTVIEELKRGYMLGDRVLRHAMVKVAAPPEEGSASNTNPT 246          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_SYNPW (Protein grpE OS=Synechococcus sp. (strain WH7803) GN=grpE PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.937e-35
Identity = 74/162 (45.68%), Postives = 103/162 (63.58%), Query Frame = -2
Query:  332 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPSEGEAA 817
            L +E    R + +RI+ADFDNFRKR  +++  L        +  +L V+DNFERA+ Q+  Q E  + ++ SYQ +YKQLV++L  LGV P+  VG  FDP LHEA++RE S    E V+IEE ++G+ L  ++LR +MVKVS GPGP      QP+E  AA
Sbjct:   65 LRDEHDVLRGQYMRIAADFDNFRKRQSRDQDDLKIQLTCSTLSEILPVVDNFERARQQLDPQGEEAQALHRSYQGLYKQLVDVLKQLGVAPMRVVGQEFDPTLHEAVLREPSDAHPEDVVIEELQRGYHLNGKVLRHAMVKVSMGPGPQDGASSQPAEAPAA 226          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_ANASP (Protein grpE OS=Anabaena sp. (strain PCC 7120) GN=grpE PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.116e-34
Identity = 74/161 (45.96%), Postives = 105/161 (65.22%), Query Frame = -2
Query:  347 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPS 829
            ++ +L  +L     + +RI+ADF+N+RKRT+KE+  L    +   +  LL ++DNFERA++ +K QTE E  I+ SYQ +YKQLV+ L  LGV P+   G  FDP LHEA+MRE + E  EG ++EE  +G+ LGDR+LR SMVKV+A      P +E  S
Sbjct:   83 QISSLKTQLDERSTQYMRIAADFENYRKRTQKEKEELDLQVKRNTILELLPIVDNFERARSHLKPQTESEMTIHKSYQGVYKQLVDSLKRLGVSPMRPEGQEFDPNLHEAVMREPTDEHPEGTVLEELVRGYYLGDRVLRHSMVKVAAPKEDTLPAQENQS 243          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_ANAVT (Protein grpE OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=grpE PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.457e-34
Identity = 74/161 (45.96%), Postives = 105/161 (65.22%), Query Frame = -2
Query:  347 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPS 829
            ++ +L  +L     + +RI+ADF+N+RKRT+KE+  L    +   +  LL ++DNFERA++ +K QTE E  I+ SYQ +YKQLV+ L  LGV P+   G  FDP LHEA+MRE + E  EG ++EE  +G+ LGDR+LR SMVKV+A      P +E  S
Sbjct:   83 QINSLKTQLDERSTQYMRIAADFENYRKRTQKEKEELDLQVKRNTILELLPIVDNFERARSHLKPQTESEMTIHKSYQGVYKQLVDSLKRLGVSPMRPEGQEFDPNLHEAVMREPTDEHPEGTVLEELVRGYYLGDRVLRHSMVKVAAPKEDTLPAQENQS 243          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_SYNE7 (Protein grpE OS=Synechococcus elongatus (strain PCC 7942) GN=grpE PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 7.233e-34
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  389 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 817
            L  EL  + +  LR++ADF+NFR+RT KER  L   ++   +  LL V+DNF+RA+ QIK Q E  E I+ SYQ +YKQLV+ L  +GV P+   G PFDP LH+A++RE++TE  +G+++EE ++G+ LGD +LR ++VKVS
Sbjct:   53 LKTELDEQNSAYLRLAADFENFRRRTLKEREELELQSKRTTITELLPVIDNFDRARAQIKPQGEEAEAIHKSYQGLYKQLVDCLKRIGVSPMRAEGQPFDPSLHDAVLREETTEHPDGIVLEELQRGYLLGDLVLRHALVKVS 195          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_PROM4 (Protein grpE OS=Prochlorococcus marinus (strain MIT 9211) GN=grpE PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.234e-33
Identity = 70/162 (43.21%), Postives = 104/162 (64.20%), Query Frame = -2
Query:  344 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPSE 829
            ++  L  E     ++ +RI+ADFDNFRKR  +++  L    Q   +  +L V+DNF+RA+ Q+  + E  + ++ SYQ +YKQLV++L  LGV P+  VG  FDP LHEA++RE S E  E +I+EE ++G+ L  R+LR ++VKVS GPGP    EE  +E
Sbjct:   68 RLEQLEREHETLNSQYMRIAADFDNFRKRQSRDQDDLRLQLQCNTLSSILPVVDNFDRARQQLNPEGEEAQALHKSYQGLYKQLVDVLKQLGVAPMRVVGQTFDPSLHEAVLREPSDELAEDIIVEELQRGYHLNGRVLRHALVKVSMGPGPKDDGEETITE 229          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_PROM1 (Protein grpE OS=Prochlorococcus marinus (strain NATL1A) GN=grpE PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.611e-33
Identity = 70/162 (43.21%), Postives = 104/162 (64.20%), Query Frame = -2
Query:  344 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPSE 829
            ++  L +E     ++ +RI+ADFDNFRKR  +++  L        +  +L ++DNFERA+ Q+  + E  + ++ SYQ +YKQLVE+L +LGV P+  V   FDP LHEA+MRE S E  E ++IEE ++G+ L  R+LR ++VKVS GPGP    EE P +
Sbjct:   79 RLQQLEKEHETLNSQYMRIAADFDNFRKRQTRDQDDLKIQLTCTTLSEILPIVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVEVLKNLGVAPMRVVDQAFDPSLHEAVMREPSDEKAEDIVIEELQRGYHLNGRVLRHALVKVSMGPGPKAVNEEIPDQ 240          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_CYAP7 (Protein grpE OS=Cyanothece sp. (strain PCC 7424) GN=grpE PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.611e-33
Identity = 70/157 (44.59%), Postives = 105/157 (66.88%), Query Frame = -2
Query:  344 SEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPSE 814
            ++++ A + R + ++A+FDNFRKRT +E+  L   A+ + +  LL V+DNFERA+ QIK   EGE +I+ SYQ +YK LV+ L  LGV  +   G PFDP+ HEA++RE + +F EG +IE+  +G+ L D++LR +MVKV+A   P   + E  SE
Sbjct:  120 NQQIDAAKRRYIGLAAEFDNFRKRTLREKEELEKQAKRKTLSELLTVVDNFERARLQIKPSNEGEGEIHKSYQGVYKNLVDSLKRLGVSAMRAEGEPFDPMYHEAMLREPTNDFPEGTVIEQLVRGYLLDDQVLRHAMVKVAAPKEPDSSETESTSE 276          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_SYNY3 (Protein grpE OS=Synechocystis sp. (strain PCC 6803) GN=grpE PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.105e-33
Identity = 69/145 (47.59%), Postives = 99/145 (68.28%), Query Frame = -2
Query:  380 SEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGP 814
            SE+L + + R + ++A+FDNFRKRT++E+       +G  +  LL V+DNFERA+TQIK  ++GE +I+ SYQ +YK LV+ L  LGV P+   G PFDP  HEA++RE + E+ E  +IEE  +G+ L D +LR SMVKV+  P
Sbjct:   90 SEQLDSIKKRYVALAAEFDNFRKRTQREKEEQAKLIKGRTITELLPVVDNFERARTQIKPNSDGENQIHKSYQGVYKNLVDSLKGLGVAPMRPEGKPFDPKYHEAMLREPTAEYPEDTVIEELVRGYLLDDIVLRHSMVKVAVAP 234          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_SYNS9 (Protein grpE OS=Synechococcus sp. (strain CC9902) GN=grpE PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.749e-33
Identity = 71/165 (43.03%), Postives = 107/165 (64.85%), Query Frame = -2
Query:  335 NLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKE---EQPSEGEA 820
            +L +E  A +++ +RI+ADFDNFRKR  +++  L        +  +L V+DNFERA+ Q+  + E  + ++ SYQ +YKQLV++L   GV  +E VG  FDP LHEA++RE++ E  E ++ EE ++G+    R+LR +MVKVS GPGP    +   EQP EG+A
Sbjct:   60 SLKQEHEAVQSQYMRIAADFDNFRKRQARDQDDLRQQLVCSTLTEILPVVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVGQEFDPTLHEAVLREENQEHAEDIVCEELQRGYHRDGRVLRHAMVKVSMGPGPESSSDAASEQPQEGDA 224          
The following BLAST results are available for this feature:
BLAST of CX044414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 357
Match NameE-valueIdentityDescription
GRPE_THEEB5.917e-3646.20Protein grpE OS=Thermosynechococcus elongatus (str... [more]
GRPE_SYNPW2.937e-3545.68Protein grpE OS=Synechococcus sp. (strain WH7803) ... [more]
GRPE_ANASP1.116e-3445.96Protein grpE OS=Anabaena sp. (strain PCC 7120) GN=... [more]
GRPE_ANAVT1.457e-3445.96Protein grpE OS=Anabaena variabilis (strain ATCC 2... [more]
GRPE_SYNE77.233e-3448.25Protein grpE OS=Synechococcus elongatus (strain PC... [more]
GRPE_PROM41.234e-3343.21Protein grpE OS=Prochlorococcus marinus (strain MI... [more]
GRPE_PROM11.611e-3343.21Protein grpE OS=Prochlorococcus marinus (strain NA... [more]
GRPE_CYAP71.611e-3344.59Protein grpE OS=Cyanothece sp. (strain PCC 7424) G... [more]
GRPE_SYNY32.105e-3347.59Protein grpE OS=Synechocystis sp. (strain PCC 6803... [more]
GRPE_SYNS92.749e-3343.03Protein grpE OS=Synechococcus sp. (strain CC9902) ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_17D09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-17D09-H17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044414 ID=CX044414; Name=CX044414; organism=Citrus sinensis; type=EST; length=830bp
TTTTTTACCTATAAAAATTTCTCAATAAACTGTCAGGTAAAAATATAGCT
CAGGCAAAACATAGGTCCAGGAGCACAATAACACTACACAAAGGTTTGAC
AAAGAAAGGCTAAAATCAGCCAAATAAATGCTAATCCCTAGAGCCATTAT
GAATTCCTCTGTTGAAACAAGCAATAACAGTCTCAGTAATCACACCCCAT
GAGATTAAATCCTATAAGCAAAACTTTTAACATTATCATGGCTGTTGCTT
TTACAAAACTGAATCTAGGTATGTGTATCAAGAGGACTCCGCTTCAACTT
CTTCTGTGCTGCTATCTGCGGTTTCAACTACAGCTGCCTCTCCTTCTGAT
GGTTGTTCTTCTTTCGGTTTCGCAGGCCCTGGACCAGCCGATACCTTTAC
CATCGATGGACGTAGGAGCCTATCGCCAAGTTTGAACCCCTTGCGGAATT
CTTCAATAATCACACCTTCATCAAATTCTGTGGAATCCTCGCGCATAATT
GCTTCGTGAAGCAATGGATCAAAAGGATTCCCAACCGTCTCCACAGGAAC
AACACCAAGTGATCCTAGGATTTCCACTAATTGCTTATATATGCTCTGAT
AGCTGTTGTTTATTTTCTCCTCTCCCTCGGTCTGCACCTTAATTTGAGTT
TTAGCTCTCTCAAAATTATCCAAAACTTGCAACAATCTCTCCATGACTTC
TCCTTGAGCATTTGTTACCAGTGAAAGGCGTTCCTTCTCCGTTCTCTTAC
GAAAATTGTCAAAGTCAGCACTGATCCTAAGAATACGAGCCCTCTCAGCT
GACAATTCTTCAGACAAGTTAACAACTTTC
back to top