CX044272

Overview
NameCX044272
Unique NameCX044272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044272 vs. ExPASy Swiss-Prot
Match: ASPC1_HUMAN (Tether containing UBX domain for GLUT4 OS=Homo sapiens GN=ASPSCR1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.201e-19
Identity = 67/209 (32.06%), Postives = 96/209 (45.93%), Query Frame = 3
Query:  231 PDDFYEFTAEDYYRILATXXXXXXXXXXX------IREAEEAARKSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDMSQDFFSASFIPGAIVYFSYDLPKGDDVVAANSGPFLH------EDVMSLKGLEVIAEQPDPVQSAPEPATVIRPP------VTQDPKPAEKKSVK------PKW 785
            PD+F+E T +D  R LA                   REA+   +  ++ K  +RV FPD + L+  F PSET+  L DF++  L  P+L FYL+ TPPK ++ D +Q  F A+  P A+V+   + P G   V    G   H       DV+  + +   A  P P+  AP+PA    P       V  +P P   + VK      PKW
Sbjct:  341 PDEFFELTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQIKEKLERYPKVALRVLFPDRYVLQGFFRPSETVGDLRDFVRSHLGNPELSFYLFITPPKTVLDDHTQTLFQANLFPAALVHLGAEEPAG---VYLEPGLLEHAISPSAADVLVARYMSRAAGSPSPL-PAPDPAPKSEPAAEEGALVPPEPIPGTAQPVKRSLGKVPKW 545          
BLAST of CX044272 vs. ExPASy Swiss-Prot
Match: ASPC1_MOUSE (Tether containing UBX domain for GLUT4 OS=Mus musculus GN=Aspscr1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.265e-18
Identity = 64/211 (30.33%), Postives = 99/211 (46.92%), Query Frame = 3
Query:  231 PDDFYEFTAEDYYRILATXXXXXXXXXXX------IREAEEAARKSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDMSQDFFSASFIPGAIVYFSYDLPKGDDVVAANSGPFLHEDVMSLKGLEVI-------AEQPDPVQSAPEPATVIRPPVTQD-----PKPAE------KKSV--KPKW 785
            PD+F+E T +D  R LA                   REA+   +  ++ K  +RV FPD + L+  F PSET+  L DF++  L  P+L FYL+  PPK ++ D +   F A+  P A+V+F  + P G         P L E  +S    +V+       A    P+  AP+P ++   P+ +D     P+P +      K+S+   PKW
Sbjct:  337 PDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQMKEKLERYPKVALRVLFPDRYILQGFFRPSETVGDLRDFVRSHLGNPELSFYLFIAPPKMVLDDHTLTLFQANLFPAALVHFGAEEPTG-----LYLEPGLLEHTVSPSTADVLVARCMSRASGSPPLLPAPDPVSLESEPIAEDGALGPPEPIQGTAQPVKRSLGKVPKW 542          
The following BLAST results are available for this feature:
BLAST of CX044272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASPC1_HUMAN1.201e-1932.06Tether containing UBX domain for GLUT4 OS=Homo sap... [more]
ASPC1_MOUSE2.265e-1830.33Tether containing UBX domain for GLUT4 OS=Mus musc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_16E03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-16E03-I6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044272 ID=CX044272; Name=CX044272; organism=Citrus sinensis; type=EST; length=785bp
GCAATAAGGACTCGACGAAGCCCTGGACTTTACTTTGGTCGCTGATGTTT
GTTGATGGTTCAACGCCGGTGCCTTTGAAGAGGAGAAGACACACTTACGT
TGATCCGATGGAAGTTGAATCAGCTAAGGCTAAGCTTGCTGCTGCAAAAG
AAAAGTTTGGACGAGAAATCCGTGTTTTTGAAACATCTGCACTTTCTTCA
TCACCAACTGTTGTCTCCAGCAGTGACGAGCCAGATGACTTTTATGAGTT
CACTGCCGAAGATTACTATCGAATTTTGGCAACTAAAAAGGAAGATAAAT
TCTTGAAGACAAAAAAAATTCGAGAAGCAGAAGAGGCAGCTCGCAAGTCC
AAATTCACAAAGGCTGTAATAAGGGTCCGCTTTCCTGATAATCACACATT
AGAAGTCAATTTCCATCCATCGGAAACAATGCAGAGTTTGGTTGATTTTC
TCAAGAGAGTGCTTTCTCAGCCAGATCTACCATTCTATTTATATACTACT
CCTCCGAAGAAGATAATAAAAGACATGTCACAAGATTTTTTTTCAGCTAG
CTTTATTCCCGGTGCTATTGTGTATTTTTCATATGATCTTCCAAAAGGTG
ATGATGTGGTAGCTGCTAACTCAGGCCCATTCCTTCACGAAGATGTTATG
TCTTTGAAAGGTTTGGAAGTCATTGCTGAGCAGCCAGACCCTGTTCAGAG
TGCACCAGAACCTGCAACCGTTATTCGTCCTCCAGTCACTCAAGACCCTA
AACCTGCTGAGAAAAAGTCTGTCAAGCCTAAGTGG
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