CX044228

Overview
NameCX044228
Unique NameCX044228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX044228 vs. ExPASy Swiss-Prot
Match: ARGE_DICDI (Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.225e-57
Identity = 110/224 (49.11%), Postives = 147/224 (65.62%), Query Frame = 3 
Query:   15 GKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPD----ENIRGSLTLTF-DEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIREIQDEGFDVQTAGYGLMATYHADNEYCLLSDMCQGYQVFVSIISQLE 671
            GK  HS +P++ +N +EL  EAL  IQ RFY DF PHPKE  Y F+  STMKPT W    G  N IPGE T+ GD+RLTPFY++ ++  +++ Y+ DIN NI +L  RGP SKY +P     E ++GS+++ +  EA+ GVAC LDS G+  L KAT E++G + P +  GTLPL+R++QD GFD+Q  G+G   TYHADNEY LLSD     ++    I  LE
Sbjct:  222 GKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDCSSTMKPTLWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRNRGPYSKYDVPASEGVEPVKGSVSIEWLGEASAGVACKLDSDGYKALGKATSEILGSLTPVATCGTLPLVRDLQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIKILSRTIDLLE 445
The following BLAST results are available for this feature:
BLAST of CX044228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARGE_DICDI1.225e-5749.11Acetylornithine deacetylase OS=Dictyostelium disco... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_16C01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-16C01-E2-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044228 ID=CX044228; Name=CX044228; organism=Citrus sinensis; type=EST; length=830bp
AACTTCATGTGACTGGAAAGCTTTTTCACAGTGGTTTACCTCATAAGGCA
ATAAATCCTTTGGAGCTAGCCATGGAAGCACTTAAAGTAATCCAGACACG
GTTTTACAAAGACTTTCCACCTCATCCGAAGGAGCAGGTCTATGGATTTG
AAACACCATCAACAATGAAACCAACCCAATGGAGTTATCCTGGAGGCGGG
ATCAATCAGATTCCTGGTGAATGTACAGTTTCAGGGGATGTCAGGTTAAC
TCCGTTCTACAATGTGACTGATGTGATGAAGAGACTACAAGAATATGTGG
ATGACATAAACGAGAACATAGAGAAGCTGGATACACGAGGTCCAGTTTCA
AAATATGTTCTACCTGATGAAAACATCAGGGGAAGCCTTACATTGACTTT
TGATGAGGCGACTAATGGAGTTGCTTGTAATCTTGATTCTCGTGGCTTTC
ATGTCTTGTGCAAGGCAACTGAAGAGGTAGTTGGGCATGTAAATCCTTAC
TCAATCACAGGGACGTTGCCTCTCATTCGAGAGATTCAAGATGAAGGTTT
TGATGTGCAAACTGCAGGCTATGGTTTAATGGCGACGTACCATGCTGACA
ACGAGTACTGTCTTCTTTCTGATATGTGCCAAGGCTATCAAGTTTTCGTC
AGTATCATCTCCCAGTTAGAAGATTGACTCTGTAATTCGAAATGTGCTAG
TGCTATTTTAATGAGCTGAGTTTCCAGCTTTACAAATTCTTAATGGCGAT
TATTTTAACTGGAGTTCATACAATTTGGATTAATAATCATAATAATAATA
ATAATTATTATTATTATTATTATTATTATT
back to top