CX044220

Overview
NameCX044220
Unique NameCX044220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044220 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.059e-86
Identity = 163/213 (76.53%), Postives = 180/213 (84.51%), Query Frame = 2
Query:  248 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXN--DLHDQNIV--IQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTS 874
            MSFRSIVRDVRDS GSLSRRSFDF+L+           +  D H++ +V  IQ + WA+LPPELL DVIKRLEESES WPAR+HVVACA+VCRSWR MCKEIV+SPE  GK+TFPVSLKQPG RD T+QCFIKRDKSNLTYHL+LCLSPALLVENGKFLLSAKR RRTT TEYVISM AD ISRSS+TYIGK+RSNFLGTKFIIYDTQP + S
Sbjct:    1 MSFRSIVRDVRDSIGSLSRRSFDFKLSSLNKEGGKSRGSVQDSHEEQLVVTIQETPWANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHADTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNS 213          
BLAST of CX044220 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.059e-86
Identity = 158/217 (72.81%), Postives = 180/217 (82.95%), Query Frame = 2
Query:  248 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXNDLHDQN------IVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSAN 880
            MSFR IV+D+RD FGSLSRRSFDFRL+              +  +      +++Q S WA+LPPELL DVIKRLEESES+WPARKHVVACA+VCRSWRAMC+EIV  PE CGKLTFPVSLKQPG RD  IQCFIKRDKS LT+HLFLCLSPALLVENGKFLLSAKRTRRTT TEY+ISMDADNISRSS++Y+GKLRSNFLGTKF++YDTQPP  +++
Sbjct:    1 MSFRGIVQDLRDGFGSLSRRSFDFRLSSLHKGKAQGSSFREYSSSRDLLSPVIVQTSRWANLPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSS 217          
BLAST of CX044220 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.997e-85
Identity = 160/218 (73.39%), Postives = 179/218 (82.11%), Query Frame = 2
Query:  248 MSFRSIVRDVRDSFGSLSRRSFDFRL------TXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANI 883
            MSFRSIVRDVRDSFGSLSRRSF+  L      T           ++L D +++IQ S WASLPPELL DVI+RLE SES+WP+RK VV+CAAVC++WR MCKEIV SPEFCGKLTFP+SLKQPG RDG IQCFIKRDKS  TYHL+LCLS A+L ++GKFLLSAKR R+TTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQP +  A I
Sbjct:    1 MSFRSIVRDVRDSFGSLSRRSFEVTLAGLSGLTGHHRGKSQSTVHELCDADLIIQESRWASLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVI 218          
BLAST of CX044220 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 4.604e-82
Identity = 147/218 (67.43%), Postives = 177/218 (81.19%), Query Frame = 2
Query:  248 MSFRSIVRDVRDSFGSLSRRSFDFR------LTXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANI 883
            MSFRSIVRDVRDSFGSLSRRSF+ R      L+           ++L D+ +V+  S W  LPPELL DV+KRLEE ES+WP+RK VVACAAVCR+WR +CK+IV+SPE CGKLTFPVSLKQPG RDG IQCFIKRDKS LTY+L+LCLSPA+L ENGKFLL+AKR RR T TEY+IS+D+ NISRSS+ Y+GK+RSNFLGTKF++YDTQPP+ + ++
Sbjct:    1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSRWVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSL 218          
BLAST of CX044220 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.340e-81
Identity = 149/218 (68.35%), Postives = 175/218 (80.28%), Query Frame = 2
Query:  248 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXNDLHDQNI------VIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANI 883
            MSFRSIVRDVRD FGSLSRR F+ RL            ++L D +       V+Q+SCWA+LPPELL DVI+RLE SE++WP+RK+VVACAAVCR+WR MC+EIV++PEFCGK+TFPVSLKQPG R+G IQCFIKRDKS  TY+L+LCLS A+LVE+GKFLLSAKR  R TCTEY I M ADN SRSS+ YIGKLRSN LGTKF+IYDTQPP  +AN+
Sbjct:    1 MSFRSIVRDVRDGFGSLSRRGFEVRLVGHRRGRSHSAVHELRDGHAAAAAADVVQSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANV 218          
BLAST of CX044220 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.340e-81
Identity = 143/211 (67.77%), Postives = 174/211 (82.46%), Query Frame = 2
Query:  248 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSAN 880
            MSFRSIVRDVRD FGSLSRR F+ R+            ++LHD   VIQ+SCWASLPPELL D+I+RLEESE++WP+RKHVVACA VCR+WR MCKEIV++PE CGK+TFP+SL+QPG RDGT+QCFI+RDKS  TY+L+L L  A+LV+NGKFLLSAKR    TCTEYVISM+A+N+SRS++T IGKLRSNFLGTKF+IYDT  P+ + +
Sbjct:    1 MSFRSIVRDVRDGFGSLSRRGFEVRILGHRRGKSHGAVHELHDPVPVIQSSCWASLPPELLRDIIERLEESEATWPSRKHVVACAGVCRTWREMCKEIVKNPELCGKITFPISLRQPGPRDGTMQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTNTNIGKLRSNFLGTKFVIYDTHTPYNATS 211          
BLAST of CX044220 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.984e-81
Identity = 149/215 (69.30%), Postives = 175/215 (81.40%), Query Frame = 2
Query:  248 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXX---NDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANI 883
            MSFRSIVRD RDSFG+LS+RSF+ +++              ++L D  +V Q S WA LPPELL DV+KRLEE +S+WP+RK VVACA+VC +WR MCK+IVR+PEFCGKLTFPVSLKQPG RDG IQCFIKRDKS LTYHL+LCLS A+L E GKFLLSAKR+RRTT T+Y+ISMD+ NISRSSS YIGKLRSNFLGTKFIIYDTQPP+ +  +
Sbjct:    1 MSFRSIVRDFRDSFGTLSKRSFEVKISGFSGRHRGKSIGPSSELDDTPVVAQQSKWAGLPPELLRDVMKRLEEDDSNWPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMDSKNISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNARTL 215          
BLAST of CX044220 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 5.628e-80
Identity = 150/214 (70.09%), Postives = 177/214 (82.71%), Query Frame = 2
Query:  248 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXN-DLHDQN-IVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANI 883
            MSF SIVRDVRD+ GS SRRSFD R++             + H ++ IVI+N+ WA+LP  LL DV+K+L+ESES+WPARK VVACA VC++WR MCK+IV+SPEF GKLTFPVSLKQPG RDG IQC+IKRDKSN+TYHL+L LSPA+LVE+GKFLLSAKR+RR T TEYVISMDADNISRSSSTYIGKL+SNFLGTKFI+YDT P + S+ I
Sbjct:    1 MSFLSIVRDVRDTVGSFSRRSFDVRVSNGTTHQRSKSHGVEAHIEDLIVIKNTRWANLPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDADNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQI 214          
BLAST of CX044220 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.447e-75
Identity = 142/216 (65.74%), Postives = 165/216 (76.39%), Query Frame = 2
Query:  248 MSFRSIVRDVRDSFGSLSRRSFD------FRLTXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSA 877
            MSFRSIVRDVRD FGSLSRRSF+      + LT           ++L D   +I  S WASLPPELL +VI+RLE  ES+WP+R++VV  AAVCR+WR MCKE V SPEFCGKLTFPVS+KQPG RDG IQC+IKR++S  TYHL+LCLS  +  E GKF+L+AKR R+TTCTEY ISM + NISRSS T IGKLRSNFLGTKFIIYDTQPP+  A
Sbjct:    1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESRWASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMVSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGA 216          
BLAST of CX044220 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.376e-62
Identity = 113/215 (52.56%), Postives = 156/215 (72.56%), Query Frame = 2
Query:  248 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXNDLHDQNIVI---QNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANI 883
            MSF+S+++D+R   GS+SR+ FD R               + D ++ +   + SCWAS+PPELL DV+ R+E+SE +WP+RK+VV+CA VCR+WR + KEIVR PE   KLTFP+SLKQPG R   +QC+I R++SN TY+L+L L+ A   ++GKFLL+AKR RR TCT+Y+IS++ D++SR S+TYIGKLRSNFLGTKF +YD QP +    +
Sbjct:    1 MSFKSLIQDMRGELGSISRKGFDVRFGYGRSRSQRV----VQDTSVPVDAFKQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQV 211          
The following BLAST results are available for this feature:
BLAST of CX044220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
TLP1_ARATH1.059e-8676.53Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP10_ARATH1.059e-8672.81Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP8_ORYSJ1.997e-8573.39Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]
TLP12_ORYSJ4.604e-8267.43Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP14_ORYSJ1.340e-8168.35Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP13_ORYSJ1.340e-8167.77Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP7_ORYSJ2.984e-8169.30Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]
TLP5_ARATH5.628e-8070.09Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP3_ORYSJ2.447e-7565.74Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]
TLP3_ARATH2.376e-6252.56Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_16B08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-16B08-C16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044220 ID=CX044220; Name=CX044220; organism=Citrus sinensis; type=EST; length=884bp
AGGGTGTTAGTTTATGTTATGTTACCAGCTATGTTCTGTTTCTGACTTGA
CTTTGCAGATATTGAGATCTTTTGGTGGTGCTTGGAGTCTTTGACCAGCT
TTATTTAACAGGGTTGAGGACCTAAAAAGGATGATTTATTGAGTCTATCA
GAGAAAAGCCATAAATACATGACTTGTAGAATATAATTTATCGGAAGTCT
TCAAAAGGGAGATATACTTGTACTGCTGCTTCTGGATAATTTATAAGATG
TCATTCCGTAGCATAGTACGTGATGTAAGAGATAGTTTCGGGAGTTTATC
TAGAAGAAGTTTCGATTTTAGATTGACTGGCCATCATGGAGGGAAATCCC
ATGGTTCGTCAAACGATTTGCATGACCAGAATATTGTAATTCAAAATAGT
TGTTGGGCTAGTCTCCCACCAGAGCTACTTTGTGATGTAATCAAGAGGTT
GGAGGAGAGTGAGAGTTCTTGGCCCGCTCGAAAACATGTTGTTGCGTGTG
CTGCTGTTTGCCGTTCTTGGAGGGCTATGTGCAAAGAAATTGTTAGAAGT
CCAGAGTTCTGTGGGAAGCTTACTTTCCCAGTGTCCTTGAAGCAGCCTGG
GGCACGTGATGGAACCATTCAATGTTTCATTAAGAGGGATAAATCTAATT
TAACATATCACCTTTTTTTGTGTCTTAGCCCTGCTTTACTAGTTGAAAAT
GGAAAATTTCTTCTGTCCGCGAAAAGGACCCGTCGAACTACTTGTACAGA
GTATGTAATCTCCATGGATGCTGACAACATTTCAAGATCAAGCAGCACTT
ATATCGGAAAGTTGAGGTCAAATTTCCTTGGGACAAAATTTATAATATAT
GACACACAGCCACCGCATACCTCTGCTAATATTA
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