CX044215

Overview
NameCX044215
Unique NameCX044215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.827e-89
Identity = 145/194 (74.74%), Postives = 165/194 (85.05%), Query Frame = -3
Query:  274 QWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 855
            QWPGSYCDT K CCYP +GKPAADFGIHGLWPNY DG+YPSNCD + PFD S ISDL +SM+K+WPTLACPSG+G  FW HEWEKHGTCSESV++QH+YFQTALNLK + NLL AL  AGI PDG SYSLESI+D+IKE+ GF+PW+ECN D SGNSQLYQ+YLCVD S S  I CPVFP+G KCG++IEFP F
Sbjct:   38 QWPGSYCDTQKKCCYPNSGKPAADFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDRSGSGLIECPVFPHG-KCGAEIEFPSF 230          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNLE_SOLLC (Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 327.405 bits (838), Expect = 6.297e-89
Identity = 146/195 (74.87%), Postives = 169/195 (86.67%), Query Frame = -3
Query:  274 QWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVL-NQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 855
            QWPGSYCDT +SCCYPTTGKPAADFGIHGLWPN NDG+YPSNCDP +P+DQSQISDL SSMQ+NWPTLACPSG+G TFWSHEWEKHGTC+ESVL NQH YF+ AL+LKNQI+LL  L+ A I PDG SY L +I++AIK A G++PWI+CNVD+SGNSQLYQ+Y+CVD S S+ I CP+FP G KCG+ IEFP F
Sbjct:   37 QWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPNNNDGTYPSNCDPNSPYDQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHPDGESYDLVNIRNAIKSAIGYTPWIQCNVDQSGNSQLYQVYICVDGSGSSLIECPIFPGG-KCGTSIEFPTF 230          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNLX_SOLLC (Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.901e-77
Identity = 129/195 (66.15%), Postives = 153/195 (78.46%), Query Frame = -3
Query:  274 QWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVP-DGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 855
            QWP SYCDT +SCCYPTTGKP  DF IHGLWPNY DG +P NCD  +  D+S+ SDL S+M+KNWP+LACPS +G+ FWSHEW KHGTC  S LNQH YFQTAL+ K + NLLQ L  AGI P +G  Y +ESIK AI++  G +P+IECNVD  GN QLYQ+YLCVD+SAS FI+CP+FP+G KCGS+IEFP F
Sbjct:   36 QWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYKDGKWPQNCDRESSLDESEFSDLISTMEKNWPSLACPSSDGLKFWSHEWLKHGTC--SALNQHAYFQTALDFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIEKGVGHTPFIECNVDSQGNHQLYQVYLCVDSSASKFIDCPIFPHGGKCGSKIEFPSF 228          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNS3_ARATH (Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.114e-76
Identity = 122/194 (62.89%), Postives = 150/194 (77.32%), Query Frame = -3
Query:  274 QWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 855
            QWPG+YCD+  SCCYP TGKPAADFGIHGLWPNY  G +P NC+P + FD  ++SDL S +Q+ WPTL+CPS +G+ FW+HEWEKHGTC+ES L+QH YF+  L LK + NLL AL  AGI PD   Y ++ I++ IK+  GF+P IECN D S NSQLYQIYLCVDTSAS FINCPV P+G +C S+++FP F
Sbjct:   30 QWPGAYCDSRHSCCYPQTGKPAADFGIHGLWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTCAESELDQHDYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMKDIENTIKQVVGFAPGIECNKDSSHNSQLYQIYLCVDTSASKFINCPVMPHG-RCDSRVQFPKF 222          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNS2_ARATH (Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.631e-28
Identity = 75/207 (36.23%), Postives = 104/207 (50.24%), Query Frame = -3
Query:  274 QWPGSYCDTAKSCCYPTTGKPAAD----FGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPS-----GNGITFWSHEWEKHGTCSESVL-NQHQYFQTALNLKNQINLLQALRTAGIVPDGS-SYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCV--DTSASNFINCPVFPNGKKCGSQIEFPPF 855
            QWPG+YC   + CC        +D    F IHGLWP+YNDGS+PS C   + F + +IS L   ++K WP+L+C S     G   +FW HEWEKHGTCS  V  +++ YF T LNL  + N+   L  AG V   S  Y L  I  AI+ A   +P + C  D      + +I +C   D    + +      + K C   +  P +
Sbjct:   40 QWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDGSWPS-CCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRD-----AIDEIRICFYKDFKPRDCVGSQDLTSRKSCPKYVSLPEY 240          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNMC_MOMCH (Ribonuclease MC OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.131e-28
Identity = 68/177 (38.42%), Postives = 96/177 (54.24%), Query Frame = -3
Query:  328 QWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVD-ESGNSQLYQIYLCVDTSASNFINC 855
            QWP + C   KS   P +G     F IHGLWP    G+  +NC   +PFD ++IS L+S +   WP +     N   FWSHEW KHGTCSES  NQ  YF+ A++++N  +++ ALR     P+G + S ++IK  +K   G  P + C  D ++  S L Q+  C     S  I+C
Sbjct:    9 QWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-GSGTSLTNCPQGSPFDITKISHLQSQLNTLWPNVL--RANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGSTLIDC 180          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNDI_DICDI (Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.169e-26
Identity = 69/195 (35.38%), Postives = 106/195 (54.36%), Query Frame = -3
Query:  280 QWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSES--VLNQHQYFQTALNLKNQINLLQALRTAGIVP-DGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFP 855
            QW  SYCD+ ++C      K    F IHGLWP  +DGSYPS C   + F+ + I DL   +  +WP+L  P+ +   FW+HE+ KHGTCS +  + + H YF T + L  + N+  AL +  I P D ++Y    I +AI    G  P I+C+     + QL  + +C+D ++ + ++CP    G  C   ++FP
Sbjct:   40 QWIYSYCDS-QTCIQ---NKEREAFTIHGLWPENSDGSYPSFCSGPS-FNVNAIQDLEDQLNFDWPSLTGPNTD---FWTHEFSKHGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYPSDSNTYKPVDITNAITTHFGGKPGIQCS-----SGQLSTVAVCIDKNSLSIMDCPDL-QGWSCSGSVKFP 220          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RN28_PANGI (Ribonuclease-like storage protein OS=Panax ginseng PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.994e-26
Identity = 64/177 (36.16%), Postives = 95/177 (53.67%), Query Frame = -3
Query:  325 QWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCP 855
            QWP  +C+   +C    T      F IHGL+P    G+    CD TA FD + +SD  + M   WP+    + + I FW HEW+KHG CSE++L Q  YF+TAL  +   +++  L   GI P+   Y  + IK+AIK+     P I+   +E+    L  I +CV+  A+ F++CP
Sbjct:   37 QWPAGFCEVNNAC---DTKSLLNTFTIHGLYPYNAKGTPALYCDGTA-FDVNSVSDFLAEMHLAWPSHETNTED-IQFWEHEWKKHGRCSEALLKQTDYFRTALAFRKAFDIVGLLNQEGIYPNNDLYRPKMIKEAIKKHLNAVPEIDFTKNENSEYVLTDINVCVNQQATRFVDCP 208          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNOY_CRAGI (Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.842e-23
Identity = 64/183 (34.97%), Postives = 95/183 (51.91%), Query Frame = -3
Query:  328 QWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSY-PSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV---LNQHQYFQTALNLKNQINLLQALRTAGIVPDGSS-YSLESIKDAIKEASGFSPWIECNVDESGNSQ--LYQIYLCVDTSASNFINC 855
            QWP + C   KSC  P +      +GIHGLWP+ +  S  P NC+ + PFD + +  L   ++K WP L  P     +FW HEW KHGTC+ S+    N+ +YF   L L  + N+ + L   GI+P  ++ Y +   + A+K   G    IEC  D+    +  LY+I +C+ T     I+C
Sbjct:   11 QWPIAVCAEHKSCFIPDS---VVGWGIHGLWPSSDTESKGPENCNGSWPFDINNVMPLVPELKKYWPNLY-PDTKANSFWEHEWSKHGTCATSLPATSNELKYFGMGLKLHAKYNISRILVNQGILPSKTAGYMINETEAAVKRELGVDAVIECVYDKEKTKKQLLYEISICL-TKEFELISC 188          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNS7_NICAL (Ribonuclease S-7 OS=Nicotiana alata PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22
Identity = 65/197 (32.99%), Postives = 94/197 (47.72%), Query Frame = -3
Query:  280 QWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSG---NGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPD-GSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGS-QIEFP 855
            QWP ++C T      P       +F IHGLWP+ N  +  + C     F   +    +  + K WP L            FW HE+ KHG C     N+ QYF  A+ LK++ +LL +LR  GI+P  G  Y+++ I   IK+ +   P + C     G  +L +I +C D+   N INCP     K  GS +I+FP
Sbjct:   32 QWPTAFCHTTPCKRIPN------NFTIHGLWPD-NVSTTLNYCAAKENFKNIEDDTKKDDLYKRWPDLTTAETYCKQHQNFWRHEYNKHGKCCSESYNREQYFDLAMALKDKFDLLSSLRNHGIIPGRGMKYTVQKINSTIKKITQGYPNLSCT---KGIMELVEIGICFDSMVKNVINCPHPKTCKPTGSNEIKFP 218          
The following BLAST results are available for this feature:
BLAST of CX044215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RNS1_ARATH2.827e-8974.74Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=... [more]
RNLE_SOLLC6.297e-8974.87Extracellular ribonuclease LE OS=Solanum lycopersi... [more]
RNLX_SOLLC1.901e-7766.15Intracellular ribonuclease LX OS=Solanum lycopersi... [more]
RNS3_ARATH6.114e-7662.89Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=... [more]
RNS2_ARATH1.631e-2836.23Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=... [more]
RNMC_MOMCH2.131e-2838.42Ribonuclease MC OS=Momordica charantia PE=1 SV=1[more]
RNDI_DICDI1.169e-2635.38Ribonuclease DdI OS=Dictyostelium discoideum GN=dd... [more]
RN28_PANGI1.994e-2636.16Ribonuclease-like storage protein OS=Panax ginseng... [more]
RNOY_CRAGI7.842e-2334.97Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1[more]
RNS7_NICAL1.747e-2232.99Ribonuclease S-7 OS=Nicotiana alata PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_16B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-16B06-C12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044215 ID=CX044215; Name=CX044215; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTTGGCTGTAATTATGGAGCGTAGGATCATCCATAAAACTTTATA
TCTAGTTTGAGAAGACAATAACTTGACAAGCAATTCAATTTGAACATCAA
ATTAAAGAAGCCATTACCACCTTAACGGCTACTGGCTAGGAAATAATTAC
TTGAGCAATTAGTTTGGTAGAACAATATGAGATTGATCAAGAATAAAAAC
GACTGAAATAGAATCAGCTTAGCATGATGAAGAAATTAATCACACACGTT
GATGATTGATCCCTTGATCACTAAAACGGAGGAAACTCAATCTGGGATCC
ACATTTTTTGCCGTTGGGAAAGACGGGGCAGTTGATGAAATTAGAGGCAG
AAGTGTCGACACACAAGTAAATCTGATAAAGCTGGCTGTTGCCTGATTCA
TCAACATTGCATTCTATCCATGGACTGAACCCACTTGCTTCTTTTATCGC
ATCCTTGATGCTTTCCAAGCTGTACGAACTCCCGTCAGGCACTATTCCTG
CGGTTCTGAGAGCTTGGAGGAGATTGATTTGATTTTTCAGGTTAAGAGCT
GTTTGAAAGTACTGATGTTGGTTAAGCACAGACTCAGAGCAAGTGCCGTG
TTTCTCCCATTCATGGGACCAAAATGTTATGCCATTCCCGCTTGGGCAAG
CCAGTGTTGGCCAGTTCTTTTGCATGCTGCTTCGCAGGTCTGATATCTGG
GATTGATCGAAAGGGGCAGTGGGGTCACAGTTGGATGGATAGGAGCCATC
GTTGTAATTAGGCCAGAGTCCATGAATCCCGAAATCTGCTGCTGGCTTTC
CAGTCGTTGGATAGCAGCAACTCTTCGCTGTATCACAGTATGATCCTGGC
CACTGCA
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