CX044126

Overview
NameCX044126
Unique NameCX044126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX044126_ssr170 microsatellite CX044126_ssr170:170..181. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX044126 vs. ExPASy Swiss-Prot
Match: RED_RAT (Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = -1 
Query:  204 ISESYSECYPGYQEYNREIVXXXXXXXXXXXXMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 524
            +S SY+ECYP   +   ++               G  KG L RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RKKME D
Sbjct:  441 MSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
[Close]
BLAST of CX044126 vs. ExPASy Swiss-Prot
Match: RED_PONAB (Protein Red OS=Pongo abelii GN=IK PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = -1 
Query:  204 ISESYSECYPGYQEYNREIVXXXXXXXXXXXXMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 524
            +S SY+ECYP   +   ++               G  KG L RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RKKME D
Sbjct:  441 MSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
[Close]
BLAST of CX044126 vs. ExPASy Swiss-Prot
Match: RED_HUMAN (Protein Red OS=Homo sapiens GN=IK PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = -1 
Query:  204 ISESYSECYPGYQEYNREIVXXXXXXXXXXXXMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 524
            +S SY+ECYP   +   ++               G  KG L RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RKKME D
Sbjct:  441 MSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
[Close]
BLAST of CX044126 vs. ExPASy Swiss-Prot
Match: RED_MOUSE (Protein Red OS=Mus musculus GN=Ik PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.802e-16
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = -1 
Query:  204 ISESYSECYPGYQEYNREIVXXXXXXXXXXXXMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 524
            +S SY+ECYP   +   ++               G  KG L RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RK+ME D
Sbjct:  441 MSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKRMEAD 548
The following BLAST results are available for this feature:
BLAST of CX044126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RED_RAT3.053e-1642.34Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1[more]
RED_PONAB3.053e-1642.34Protein Red OS=Pongo abelii GN=IK PE=2 SV=1[more]
RED_HUMAN3.053e-1642.34Protein Red OS=Homo sapiens GN=IK PE=1 SV=2[more]
RED_MOUSE6.802e-1641.44Protein Red OS=Mus musculus GN=Ik PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_15E11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15E11-I21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044126 ID=CX044126; Name=CX044126; organism=Citrus sinensis; type=EST; length=830bp
ATTTTACAGCCCAGTTAAAAAGGAAATTGAATAAAAATAATTATTTTCAT
ACAGCACTGTAACTAAGAAACATTGCAAACTTGTAACTTACAGAGAATAC
TTTCCCAATTACATATTAGTGTCAATTAAACTGCCAATCTTCACACTCGA
GGCTTCTTCCCAGGTTGTACATCATCATCATAATGGCCACCTTCACCGTT
AGTATCCTTCTCCATTTTCTTTCTTGCTAGAATTTTATTAATCTTGTGAA
GCTCATTGGTTAGCTTCTGATCTTTGTTCTGTTTCCGTGTCTTCCGACCA
TCTTGCATCTTCACACCAAATTGAAAGGCAGCTTTGGGCATAGCTTCCTT
CTGCTCATTGTATGTTGCCCATTCCTCTTCTGTCTCAAAGTCCCACCGAT
GAAGACGACCCTTTGCCCTTCCACCCATATCCATTTTAGACAAGTCATCT
TCATCATCACTGTCCACAATTTCACGGTTATACTCTTGATAACCCGGGTA
ACATTCAGAATAACTCTCAGAGATGAAGTTAGGATCCTTTTCTCGGGCAT
CTTTCTCTCTCAATTGTAGAAGCCTCTGATCATCCCGCTTGAAGACAGAT
CCCAAGCCCCGGTCCTTCTCTTCTTGAGTCATGAAGCGTGGATCTTGTGG
CATATTTAAACCTGCTTGCATCTCATAAGTCTGCATATCCGGCTGGAGGT
ATTGTTCGGGATAAGCCAATTGCTCAGCATATTGATAGTCCTGCCACTCT
CCCTGGTAGCCACCAGCCAAAGCTTGTGCTTGCATGGCATCATATCCATT
CGTATCTTGCCAGGCCAGAGGAGGCTCGGC
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