CX044072

Overview
NameCX044072
Unique NameCX044072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5720 contig Csv1_Contig5720:155..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX044072 vs. ExPASy Swiss-Prot
Match: ATP7_ARATH (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 5.268e-88
Identity = 163/222 (73.42%), Postives = 190/222 (85.59%), Query Frame = -2 
Query:  175 VILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 840
            VILQ+QHAI VR FA EAA    KGDEMLK +F D+K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKGM LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct:   19 VILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240
The following BLAST results are available for this feature:
BLAST of CX044072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP7_ARATH5.268e-8873.42Probable ATP synthase 24 kDa subunit, mitochondria... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_15B10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15B10-C19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044072 ID=CX044072; Name=CX044072; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTAAAGGTGCCGAATGTGTGATTTCATTGCACAAACAGTGATAAA
CGGAATTCCAGTTCTCTCATGGTCTCTTATTCTTAAAATCGGGAGCAATG
ATGGTATTTTCCACATTCCAAGTTGCTGATTTCCATTATGCTCAAAAACC
GTAAAAAGTAAATGCAGAGACTCAAAGGAAGTTTCTGACATCCAAGGACT
TCACTTCGACCATTTCCTCATCCTTGAATTCCTCTCTCTTCTTTTGTGTT
TCCATGGCCTCAAGAGCATCCTTCTTCAATTCTTCCAACTGTGCTTTGGC
AATTTTGAGTTCCAACTGTTCTTCATACTTTGGTAGATCCTCCTTTCGGA
TCCCAAGCTTCTTATTAATCTTGTCAAACTCAGCTGTAAGAAGAGCCATC
CCCTTCTTATCATTCCTCATAAGAGGCTTTTTAATTTCTTTTTCAACTTT
CTCCAATGCATCCATCATCATAGCCTCAGCACCATGCTCATCAATGAGAC
CTCTCCTCTCCCTTATTTCCTTGAGCGTCAACAAATATGTTCGAGCATCT
GGAATTCCTGCTGTTCGTGTTTCAATGGTATACGCTATTCGTTGGGATTC
TGAGAACAAGTCTGCCTTCTCTCTGACAGTCTTCATGACATTAGCATACT
GAGAAACAGCAGCAGGATCCTCTGGAGCAATGGTGATCTTCTCCTTCCGG
AGTACCCCCAAGGCAGTCTCAAATTTCTTCTTAACATCCAAAAAGATGTT
TTTCAACATCTCATCTCCTTTAAGAGCCTGAGGAGCAGCTTCGTTTGCAA
AGAAACGAACTGAAATTGCATGCTGCCGTTGCAGTATCACTTGACTACTA
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