CX044062

Overview
NameCX044062
Unique NameCX044062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044062 vs. ExPASy Swiss-Prot
Match: BH014_ARATH (Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.655e-45
Identity = 93/164 (56.71%), Postives = 130/164 (79.27%), Query Frame = -3
Query:  195 LNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRESKKV-KLEISDNHSTTTSVD-QARPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTED 680
            L+HVEAE+QRREKLNHRFYALRA+VP VSRMDKASLLSDAVSYI  LK KIDDLE+++ + +  +  KL+ S ++++ +SV+ Q     + S  G +LEV+ KI+G +A+IRVQ+ENVNHP + LMS+L ++D ++ HA+ S ++ +M+QD+VV VP+GLR+ED
Sbjct:  248 LSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETEIKKMKMTETDKLDNSSSNTSPSSVEYQVNQKPSKSNRGSDLEVQVKIVGEEAIIRVQTENVNHPTSALMSALMEMDCRVQHANASRLSQVMVQDVVVLVPEGLRSED 411          
BLAST of CX044062 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.058e-42
Identity = 94/167 (56.29%), Postives = 124/167 (74.25%), Query Frame = -3
Query:  195 ETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQ--RESKKVKLEISDNHSTTTSVDQARPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTED 689
            E PLNHVEAERQRREKLN RFYALRAVVPNVS+MDKASLL DA++YI ELK K+   ES+ LQ   + ++VKLE++   ++ +  D +  SS  S     +E+E KI+G DAMIRV+S   NHPAA+LMS+L DL+L+++HASMS VNDLM+Q   V++   + T++
Sbjct:  448 EEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRKASASGGDMS--SSCSSIKPVGMEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHASMSVVNDLMIQQATVKMGFRIYTQE 612          
BLAST of CX044062 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.211e-38
Identity = 92/204 (45.10%), Postives = 124/204 (60.78%), Query Frame = -3
Query:  195 DSEHSDSDCPLPPPV--NNISAVEXXXXXXXXXXXXXXRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRESKKVKLEISDNHSTTTSVDQARPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTED 800
            DS HSD +  +      N +                  RE PLNHVEAERQRREKLN RFY+LRAVVPNVS+MDKASLL DA+SYI ELK K+   ES   +   K++ +   +  +  +SV   +  +  S     +EV+ KI+G DAMIR+Q    NHP AK M +L++LDL+++HAS+S VNDLM+Q   V++ +   T+D
Sbjct:  373 DSNHSDLEASVAKEAESNRVVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESD-KEELQKQIDVMNKEAGNAKSSVKDRKCLNQESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVKMGNQFFTQD 575          
BLAST of CX044062 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.524e-36
Identity = 80/160 (50.00%), Postives = 111/160 (69.38%), Query Frame = -3
Query:  219 ETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLES--QLLQRESKKVKLEISDNHSTTTSVDQARPSSAGS-GGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRV 689
            E PLNHVEAERQRREKLN RFY+LRAVVPNVS+MDKASLL DA+SYI ELK K+   ES  + +Q++   +  E ++     +   + + S+  S      +E++ KI+G D MIRVQ    +HP A+ M +L++LDL+++HAS+S VNDLM+Q   V++
Sbjct:  411 EEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAESDKEEIQKKLDGMSKEGNNGKGCGSRAKERKSSNQDSTASSIEMEIDVKIIGWDVMIRVQCGKKDHPGARFMEALKELDLEVNHASLSVVNDLMIQQATVKM 570          
BLAST of CX044062 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.030e-34
Identity = 84/165 (50.91%), Postives = 116/165 (70.30%), Query Frame = -3
Query:  204 ETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKID--DLESQLLQRESKKVKLEISDNHSTTTSVDQARPSSAGSGGGFNLEVETKIMGS-DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLR 689
            + PLNHVEAER RREKLNHRFYALRAVVPNVS+MDK SLL DAV YI ELK K +  +LE   ++ +  ++K EI+   +   SV +    ++       +++E KIM S DAM+RV+S   +HP A+LM++L DL+L+++HAS+S +NDLM+Q   V++  GLR
Sbjct:  339 DKPLNHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVELEKHAIEIQFNELK-EIAGQRNAIPSVCKYEEKASEM-----MKIEVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHASISVMNDLMIQQANVKM--GLR 495          
BLAST of CX044062 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.063e-26
Identity = 66/160 (41.25%), Postives = 101/160 (63.12%), Query Frame = -3
Query:  210 ETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRESKKVKLEISDNHSTTTSVDQARPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG 689
            E PLNHVEAERQRREKLN RFYALR+VVPN+S+MDKASLL DA+SYI+EL+ K+  +E +       +V  + S + S T +V+++             EV+ + M  + ++RV S   +HPA++++ ++R+ ++ L  A +S   D M    V++  +G
Sbjct:  391 EEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDE-------RVGTDKSLSESNTITVEESP------------EVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSLAEDTMFHTFVIKSNNG 531          
BLAST of CX044062 vs. ExPASy Swiss-Prot
Match: BH003_ARATH (Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21
Identity = 59/166 (35.54%), Postives = 95/166 (57.23%), Query Frame = -3
Query:  198 ETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIREL--KVKIDDLESQLLQRESKKVKLEISDNHSTTTSVDQARPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTE 689
            E  LNHVEAERQRREKLN RFYALRAVVPN+S+MDKASLL+DA++YI ++  K+++ + E Q+++R                   +Q  P+          EV+ +    DA++R+      HP +K++ +LR+ ++  H ++++   + ++    +R   G   E
Sbjct:  316 EEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKKIRVYETEKQIMKRRES----------------NQITPA----------EVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSNVAITEEGVVHTFTLRPQGGCTAE 455          
BLAST of CX044062 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.673e-21
Identity = 59/153 (38.56%), Postives = 88/153 (57.52%), Query Frame = -3
Query:  222 LNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRESKKVKLEISDNHSTTTSVDQARPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVR 680
            LNHVEAERQRREKLN RFYALR+VVPN+S+MDKASLL DAVSYI EL  K+  +E++       + +L  S N           P S  S      ++  +  G D  +R+     +HPA+++  +  +  +++ ++++    D +L   VV+
Sbjct:  432 LNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAE-------RERLGYSSN----------PPISLDS------DINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTVLHTFVVK 561          
BLAST of CX044062 vs. ExPASy Swiss-Prot
Match: BH018_ARATH (Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.442e-16
Identity = 50/147 (34.01%), Postives = 85/147 (57.82%), Query Frame = -3
Query:  264 NHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES------KKVKLEISDNH--STTTSVDQARPSSAGSGGGFNL-EVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASM 677
            +H+ AER+RREKL  RF AL A++P + +MDKAS+L DA+ +I+ L+  + + E Q  ++        KK  L + +NH  S+++S D  R SS+      NL E+E ++ G D +I++  E       K+M  +  L L + ++++
Sbjct:  126 DHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYEEQKKEKTMESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSS-----NLPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNV 267          
BLAST of CX044062 vs. ExPASy Swiss-Prot
Match: BH025_ARATH (Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 50/147 (34.01%), Postives = 83/147 (56.46%), Query Frame = -3
Query:  264 NHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRE------SKKVKLEISDNHSTTTSVDQARPSSAGSGGGFNL---EVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASM 677
            +H+ AER+RREKL  RF AL A+VP + +MDKAS+L DA+ +I+ L+ ++ +LE Q  +R        KK KL + DN+ +         SS+   G  +L   E+E +    D +I++  E      AK+M+ +  L + + ++S+
Sbjct:  152 DHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGELEEQKKERRLESMVLVKKSKLILDDNNQSF--------SSSCEDGFSDLDLPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSV 290          
The following BLAST results are available for this feature:
BLAST of CX044062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
BH014_ARATH8.655e-4556.71Transcription factor bHLH14 OS=Arabidopsis thalian... [more]
RAP1_ARATH1.058e-4256.29Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH004_ARATH1.211e-3845.10Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH2.524e-3650.00Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH028_ARATH4.030e-3450.91Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
AIB_ARATH1.063e-2641.25Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
BH003_ARATH1.756e-2135.54Transcription factor bHLH3 OS=Arabidopsis thaliana... [more]
BH013_ARATH6.673e-2138.56Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
BH018_ARATH8.442e-1634.01Transcription factor bHLH18 OS=Arabidopsis thalian... [more]
BH025_ARATH1.592e-1434.01Transcription factor bHLH25 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_15B03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15B03-C5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044062 ID=CX044062; Name=CX044062; organism=Citrus sinensis; type=EST; length=808bp
TTTAGATAAAACAGCTGATCGATTTCCGTAATTACAAGAGGTGGAAATAA
CCAAGAGAGGAGAAAACTGAAAAGATGATTAAAGAAACATAAAAGCATCC
AAAGAACACAACTCGTGCTATGATTTGAGCTATTACATACATGATCATAA
CAATCTTACTGATCTAGTCTCCTAAGAAGAGCCGATCTGAGAGCATCTTC
AGTTCTCAAACCATCAGGAACCCTAACCACAATATCTTGAAGCATGAGAT
CATTAACACATGACATGCTAGCATGATGCAACTGCAAGTCCAGGTCACGC
AGTGAACTCATTAGCTTAGCAGCCGGATGGTTCACATTCTCAGATTGGAC
TCTGATCATGGCATCACTGCCCATAATCTTGGTCTCAACTTCAAGATTGA
ACCCACCGCCTGAACCAGCGGAACTAGGCCTAGCTTGGTCCACGGATGTG
GTGGTGCTATGATTATCAGAAATCTCCAGCTTCACTTTCTTGGACTCCCT
TTGAAGCAGCTGTGACTCCAAATCATCAATCTTGACCTTGAGTTCCCTTA
TGTAAGACACAGCATCAGAGAGCAAAGATGCTTTGTCCATCCTTGACACA
TTTGGAACCACAGCTCGCAGTGCATAGAACCGGTGGTTCAGCTTCTCACG
CCTCTGCCGCTCAGCTTCAACATGGTTCAGTGGCGTCTCTCTGCCGAGTC
CTGGCTTTCTTCCCCTTTTCTTTGGCGTTCTTTTCTCCACAGCACTAATA
TTATTCACTGGCGGGGGCAAGGGGCAATCGGAATCCGAATGCTCAGAATC
TACTGTAT
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