CX044022

Overview
NameCX044022
Unique NameCX044022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX044022 vs. ExPASy Swiss-Prot
Match: SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.419e-48
Identity = 92/164 (56.10%), Postives = 116/164 (70.73%), Query Frame = -3 
Query:  314 DFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 805
            DF+A AW  KCSYD QL+ LL QY+V  E ELVTGHI  + K +S+KQG++K+RLK +YSALRKEF+  FE + SD   + +DEKN L+E KASAWYQVTYHP+WV+KS  +   D       LSFAWI  DYLARIK+RC     ++  KPV  LA Y+++RI
Sbjct: 1055 DFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISERI 1218
[Close]
BLAST of CX044022 vs. ExPASy Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11
Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = -3 
Query:  386 DFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 805
            D+I +A   K  YD +L  L++ Y +  E E+++G I  M K  ++K     + ++ +  +LRKE R  F +M  D      D      E KASAWY VTYHPE+     +  E+        +SF W   + L RIK R
Sbjct:  593 DYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSD--ADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDAS----EAKASAWYHVTYHPEFWGCYNEGYERPH-----FISFPWCIYEKLLRIKQR 721
The following BLAST results are available for this feature:
BLAST of CX044022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SHL2_ORYSJ8.419e-4856.10Probable RNA-dependent RNA polymerase SHL2 OS=Oryz... [more]
RDR1_ORYSJ6.302e-1133.57Probable RNA-dependent RNA polymerase 1 OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14H06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14H06-P12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044022 ID=CX044022; Name=CX044022; organism=Citrus sinensis; type=EST; length=810bp
CTTTTTTTTTTTTTTTTGACCTGCCAGCAACTTGACACCAATCAAATAAA
ATAATCAAATTCCTGAGAAATGAGCAATACAAGATAGCATCCAAGTTTCC
AAACAAAGCACGAAAGTTCCTATAACATTTTACAAAATTAATAAACATGT
ACATATATCATATATCATGCTTGGATAACAGTTTTTAAGGCCAGTGCTGC
CATAGTAAAATCACATGGCAGCTTAACCTTTGACAATGGCAGAGTGGCTT
GCAGCCTATTAAAGCCTGTTACAGCCACAAAAAGTAGCTGTTGGCATCTT
CAAAAACTAGTCAGATCCTATCAGCAACATACCTGGCTAAATAATTGACC
GGTTTAGAGGTGTCAATATTTGCCATTTCCCGGCACCTAATTTTGATCCG
AGCAAGATAATCATTTGCAATCCAGGCAAAACTCAATAACACTACACTCC
TAGCACTATCTTGCTCTTGCAAATCAAGTGACTTCTTTACCCATTCCGGA
TGGTAAGTAACCTGGTACCACGCTGATGCCTTTCGTTCAAATAATGCATT
CTTTTCATCCTCAGAGAGGAGCTCACAATCAGAGTCCATTTTCTCAAAAA
CTTGTCTAAACTCTTTCCTTAACGCACTATAAGAATGCTTGAGCCTCTCC
TTTAGTTCTCCTTGCTTCCGGCTGTTGTATTTTGGCATGGACCAAATATG
CCCGGTCACTAATTCTTCTTCCCTGTTCACTTTGTACTGTTCCAGAAGAC
CATTCAGCTGGCCATCATAAGAGCACTTTTGATTCCATGCATCTGCAATG
AAATCAACTG
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