CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX044004_ssr489 microsatellite CX044004_ssr489:489..500. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1984 contig Csv1_Contig1984:23..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.513e-65
Identity = 126/216 (58.33%), Postives = 163/216 (75.46%), Query Frame = 3
Query:  144 LTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            LTWQDL V V  G  +  +++L+GLTGYA PG L A+MGPSG GKST+LDALA RL +N   +G +L+NGRK  L++GT+AYVTQDD LI TLTV E ++YSA+++LPD M + +K+   E TI EMGLQD  +T IG W  +G+SGG+KRRVSI +E+L RP+LLFLDEPTSGLDSA++++V   +  L +       RT+IASIHQPSSEVF+L
Sbjct:   50 LTWQDLTVMVTMGDGE-TQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR-----DGRTVIASIHQPSSEVFEL 259          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.864e-61
Identity = 122/243 (50.21%), Postives = 166/243 (68.31%), Query Frame = 3
Query:   63 EVVESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            E+  SSS  +     + ++     G +L W+DL V +P+      R +LQ L GYA PG ++AIMGPSG GKSTLLD+LAGRL  N    G +L+NG+K  L YG  AYVTQ+D L+ TLTV E + YSA L+LP  M+K +  +  E TI E+GLQD  +  IG W A+G+SGG+++RVSI +E+LTRP++LFLDEPTSGLDSA++++V+  +  +  RD     RT+I+S+HQPSSEVF L
Sbjct:    2 ELEGSSSGRRQLPSKLEMSR----GAYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSASAFFVIQALRNI-ARD----GRTVISSVHQPSSEVFAL 235          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.334e-61
Identity = 120/241 (49.79%), Postives = 166/241 (68.88%), Query Frame = 3
Query:   69 VESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            +ES+SN +       +    G G +L W+DL V +P+      R +L GL G+A PG ++AIMGPSG GKSTLLD+LAGRL  N    G +L+NG+K  L YG  AYVTQ+D L+ TLTV E + YSA L+L   +TK +  +  E TI E+GLQD  +  IG W ++G+SGG+++RVS+ +E+LTRP++LFLDEPTSGLDSA++++V+  +  +  RD   G RT+++SIHQPSSEVF L
Sbjct:    3 LESTSNGRRPPPPAEI----GRGAYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNI-ARD---GGRTVVSSIHQPSSEVFAL 235          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.471e-57
Identity = 106/218 (48.62%), Postives = 156/218 (71.56%), Query Frame = 3
Query:  138 VFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            +++ W+DL V +P+  +   + +L G+ G   P  +LAIMGPSG GKSTLLDALAGRL  N   +G++L+NG+KR L +G +AYVTQ+D L+ TLTV E++ YSA L+LP  +T+ +  +  E TI +MGL++  +  IG W  +G+SGG+K+R+SI +E+LT+P LLFLDEPTSGLDSA++++V+  +     R+     +T+++SIHQPS EVF L
Sbjct:    8 MYVAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVVQIL-----RNIASSGKTVVSSIHQPSGEVFAL 220          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.787e-40
Identity = 97/200 (48.50%), Postives = 131/200 (65.50%), Query Frame = 3
Query:  198 RSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRL-GSNTRQAGEILIN-GRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            R+IL G+TG   PGE +A++GPSG GKSTLL+A+AGRL GSN    G+ILIN G+        + +V QDD L   LTV E + + A L+LP ++T+  K   AE  I E+GL    NT +G    +G+SGG+++RVSI  E+L  P LL LDEPTSGLD+ A+  ++  +A L    HG G +T++ SIHQPSS VFQ+
Sbjct:   81 RTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNL--TGKILINDGKITKQTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGL---AHGKG-KTVVTSIHQPSSRVFQM 274          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.754e-40
Identity = 103/267 (38.58%), Postives = 157/267 (58.80%), Query Frame = 3
Query:   12 MSSLDHSIPVPAISRAFEVVESSSNNKTATHSINVNEDDGDGVFLTWQDLW--VTVPDG----QKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYG-TSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            MSS  + + +P   R    +  SS+N+  T +         G  L++ D+   V V  G    +K   + IL  + G  +PG L AI+GP+G GKS+LLD LA R   +   +G++LING  R   +   S YV QDD ++ TLTV E + +SA L+LP TMT  +K ER  M I+E+GL    ++++G    +G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ +  V+  + ++ ++      RTII SIHQP   +F+L
Sbjct:    1 MSSNSYQVSIPMSKRNTNGLPGSSSNELKTSA--------GGAVLSFHDICYRVKVKSGFLFCRKTVEKEILTNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHGL-SGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-----GRTIIFSIHQPRYSIFKL 252          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB14G_ARATH (ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.109e-40
Identity = 88/203 (43.35%), Postives = 129/203 (63.55%), Query Frame = 3
Query:  186 KKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK-RALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            K   ++IL G+TG   PGE LA++GPSG GK+TLL AL GRL      +G+++ NG+         + +V QDD L   LTV E ++++A L+LP ++T+ +K E  +  I E+GL    N+ IGG   +G+SGG+K+RVSI  EML  P LL LDEPTSGLDS  ++ +++ I +L       G RT++ +IHQPSS ++ +
Sbjct:   75 KSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKTF--SGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRL-----ASGGRTVVTTIHQPSSRIYHM 270          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.807e-39
Identity = 101/252 (40.08%), Postives = 146/252 (57.94%), Query Frame = 3
Query:   24 DHSIPVPAISRAFEVVESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNT-RQAGEILINGRKRALAYG-TSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPS 773
            D S+P     +A   V     N   T    V   D  G F              K   R+IL+GLTG  +PGE+LA++GPSG GK++LL AL GR+G    +  G I  N +  + A   T+ +VTQDDAL   LTV+E + ++A L+LP++  K +K ++A+  + E+GL    +T IGG   +G+SGG+++RVSI  E+L  P LLFLDEPTSGLDS  +  ++S + +L +     G RT++ +IHQPS
Sbjct:   20 DRSLPFSIFKKANNPVTLKFENLVYT----VKLKDSQGCF----------GKNDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLSKAVKRTTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELAR-----GGRTVVTTIHQPS 252          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.807e-39
Identity = 88/204 (43.14%), Postives = 133/204 (65.20%), Query Frame = 3
Query:  183 QKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK-RALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            + K NR +L+ ++G  +PGELLA++GPSG GK+TL+ ALAGRL    + +G +  NG    +     + +VTQDD L   LTV E + Y+A L+LP  +T+ +K E+ EM + ++GL    N+ IGG   +G+SGG+++RVSI  EML  P LL LDEPTSGLDS  +  +++ +  L +     G RT++ +IHQPSS ++++
Sbjct:   92 EPKPNRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQG--KLSGTVSYNGEPFTSSVKRKTGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLAR-----GGRTVVTTIHQPSSRLYRM 288          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.025e-39
Identity = 101/223 (45.29%), Postives = 141/223 (63.23%), Query Frame = 3
Query:  135 GVFLTWQDLWVTVPDGQKKGNRS---ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGR-LGSNTRQAGEILINGRKRALAYGT-SAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQ 788
            G ++ W+DL   V D +K G      +L  + GY +PG LLA+MGPSG GKSTLLD LA R  G +T+  G+ILING++R   +   SAYV Q D L  T TV EA+ +SA+ +LP  M   +K +  E  I+ + L    N +IG  G +GLS  Q++RV+I +E+ + P+LLFLDEPTSGLDS+A+  VM+ I K+         R+II +IHQPS+ +F+
Sbjct:  712 GCYMQWKDLVYEV-DVKKDGKNQRLRLLNEINGYVKPGMLLALMGPSGAGKSTLLDVLANRKTGGHTK--GQILINGQERTKYFTRLSAYVEQFDVLPPTQTVKEAILFSAKTRLPSDMPNEEKIKFVENIIETLNLLKIQNKQIGH-GEEGLSLSQRKRVNIGVELASDPQLLFLDEPTSGLDSSAALKVMNLIKKI-----ASSGRSIICTIHQPSTSIFK 925          

HSP 2 Score: 121.709 bits (304), Expect = 4.615e-27
Identity = 71/221 (32.13%), Postives = 126/221 (57.01%), Query Frame = 3
Query:  135 GVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR--KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            G+++T ++L +++   +K   R+IL  L  + +PG ++ I+G  GCGK++++ ALA +L S T  +G +L NG+   ++  +   AYV Q D  +   TV E   +SA LQ+ +  ++ +K  R +  +K + L    +T +G    +G+SGGQK+RV+I +EM+    L  +DEP++GLDS  +  +M    +L      V   + + ++ QP  EV +L
Sbjct:   50 GMYVTARNLSMSIGTEKKGDKRNILSDLNFFLKPGSMVLILGSPGCGKTSVMKALANQLHSET-VSGSLLFNGKAANKSTHHRDVAYVVQGDHHMAPFTVRETFKFSADLQMSEGTSEEEKNARVDYILKTLDLTRQQDTVVGNEFLRGVSGGQKKRVTIGVEMVKDAGLFLMDEPSTGLDSTTTLELMKHFRELS----NVNQVSSLVALLQPGVEVTKL 265          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB11G_ARATH9.513e-6558.33ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB15G_ARATH2.864e-6150.21ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB12G_ARATH8.334e-6149.79ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB13G_ARATH1.471e-5748.62ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB25G_ARATH2.787e-4048.50ABC transporter G family member 25 OS=Arabidopsis ... [more]
ABCG2_PIG4.754e-4038.58ATP-binding cassette sub-family G member 2 OS=Sus ... [more]
AB14G_ARATH8.109e-4043.35ABC transporter G family member 14 OS=Arabidopsis ... [more]
AB9G_ARATH1.807e-3940.08ABC transporter G family member 9 OS=Arabidopsis t... [more]
AB21G_ARATH1.807e-3943.14ABC transporter G family member 21 OS=Arabidopsis ... [more]
ABCG2_DICDI4.025e-3945.29ABC transporter G family member 2 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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