CX043986

Overview
NameCX043986
Unique NameCX043986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043986_ssr26 microsatellite CX043986_ssr26:26..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1895 contig Csv1_Contig1895:18..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043986 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 86/240 (35.83%), Postives = 100/240 (41.67%), Query Frame = 3 
Query:  153 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGTTSTAVLTNCNTTTAASQRQKXXXXXXXXXXXXXDQKLLFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDLNLPVLPEL------SPAFFVSGDDEVESPL 782
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG           +  A    +                   FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE               D+EV+SPL
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGKQRVQAPQPESFAAPVPAE-------------------FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPL 251
The following BLAST results are available for this feature:
BLAST of CX043986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT6.575e-2635.83Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14F10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14F10-L20-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043986 ID=CX043986; Name=CX043986; organism=Citrus sinensis; type=EST; length=786bp
CACACATTCTGAATCTGAAATTAAGCTCTCTCTCTCTCTCTCTCTCTCGC
TCTTTCACACTCACTCTTGGTTTTAGATTCAAAAGAGTAACGGAGATGGC
ACTGGAAGCTCTCAACTCTCCAACTACTTCGACGCCGCCGTTTCACTTCG
AAGAAGCTAATCTTCACTGCCTTGAGCCATGGACCAAACGCAAGCGCTCA
AAGCGTCCACACAATCCTCCAACTGAAGAAGAGTATCTCGCGCTCTGCCT
CGTCATGCTTGCACGTGGCACAACCTCCACCGCCGTCTTAACTAACTGCA
ACACGACCACCGCCGCCTCACAGCGACAGAAGTCTCCTGCTCTATCTACT
GCTGCAACGACGTCGTCCTCTGACCAGAAGCTTCTCTTCAAGTGCAGCGT
GTGCGACAAGGCGTTTTCTTCTTACCAAGCCTTGGGTGGTCACAAGGCCA
GCCACCGTAAGGGATCTGGGGGCGGCGATGAACACTCCGCATCCACTACC
ACCAACACCAACGCAACCGCCACGACCACCGGCGTACCGAACGCCACTGG
TAGGACCCACGAGTGTTCCATCTGTCACAAGTCCTTCCCCACTGGCCAAG
CCTTGGGCGGACACAAACGTTGTCACTACGATGGCGGCGAGAAGAGCGGA
GTGACGTCATCCGGATCCAGTAGCACTCACAGCCNAGTCAGCCACCGTGA
CTTTGACCTCAACCTCCCTGTCTTACCGGAGCTCTCCCCTGCTTTCTTCG
TCTCCGGTGATGACGAGGTGGAGAGTCCACTGCCGG
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