CX043961

Overview
NameCX043961
Unique NameCX043961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043961 vs. ExPASy Swiss-Prot
Match: EIN4_ARATH (Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.603e-45
Identity = 96/170 (56.47%), Postives = 127/170 (74.71%), Query Frame = -3
Query:  257 PSSHGFAQSMGLVLRFQLRPSVAIPIXXXXXXXXXXXXXS-LLRGLQVLLADGDDMNRIVTRKLLEKLGCSVSAVSTGYECLSAMGPTAV-FQLVILDLQMPELDGFEVALKIRKFRSRSWPLIVALTASGDEDVWEKCMQVGMNGVIRKPVLLQGIANELRRVLLHANK 760
            P SHG  QSM LVLRFQ RPS+   I             + +LRGL++ LAD DD+NR VT++LLEKLGC V+AVS+G+ECL+A+    + +++VILDLQMPE+DGFEVA+KIRKF    WPLI+ALTAS ++ V E+C+Q+GMNG+I+KPVLL  +A+ELRR L  A++
Sbjct:  597 PKSHGQTQSMQLVLRFQTRPSIRRSILAGNAPELQHPNSNSILRGLRITLADDDDVNRTVTKRLLEKLGCEVTAVSSGFECLNALSNVEMSYRVVILDLQMPEMDGFEVAMKIRKFCGHHWPLIIALTASTEDHVRERCLQMGMNGMIQKPVLLHVMASELRRALQTASE 766          
BLAST of CX043961 vs. ExPASy Swiss-Prot
Match: ETR2_ARATH (Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR2 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.953e-45
Identity = 96/179 (53.63%), Postives = 131/179 (73.18%), Query Frame = -3
Query:  251 VPSSHGFAQSMGLVLRFQLRPSVAI---PIXXXXXXXXXXXXXSLLRGLQVLLADGDDMNRIVTRKLLEKLGCSVSAVSTGYECLSAMGP-----TAVFQLVILDLQMPELDGFEVALKIRKFRSRSWPLIVALTASGDEDVWEKCMQVGMNGVIRKPVLLQGIANELRRVLLHANKVV 763
            VP S G  ++M L+LRF+ RPS+++                  SLLRGLQVLL D +D NR VTRKLLEKLGC V+AVS+G++CL+A+ P     +  FQ+V+LDLQM E+DG+EVA++IR   SRSWPLIVA T S DE++W+KC Q+G+NGV+RKPV+L+ + +ELRRVLL A++++
Sbjct:  598 VPGSDGSPETMSLLLRFRRRPSISVHGSSESPAPDHHAHPHSNSLLRGLQVLLVDTNDSNRAVTRKLLEKLGCDVTAVSSGFDCLTAIAPGSSSPSTSFQVVVLDLQMAEMDGYEVAMRIR---SRSWPLIVATTVSLDEEMWDKCAQIGINGVVRKPVVLRAMESELRRVLLQADQLL 773          
BLAST of CX043961 vs. ExPASy Swiss-Prot
Match: ETR1_PELHO (Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.740e-19
Identity = 55/124 (44.35%), Postives = 83/124 (66.94%), Query Frame = -3
Query:  266 GLQVLLADGDDMNRIVTRKLLEKLGCSVSAVSTGYECLSAMGPTAVFQLVILDLQMPELDGFEVALKIR-KFRSR-SWPLIVALTASGDEDVWEKCMQVGMNGVIRKPVLLQGIANELRRVLLH 631
            GL+VLL D + ++R+VT+ LL  LGC V++VS+  ECL  +      ++V +D+++P LDG E+A++I  KF  R   PLIVALT++ D+   E C++VGM GVI KPV +  + N L ++L H
Sbjct:  613 GLKVLLMDENGISRMVTKGLLMHLGCDVTSVSSSEECLRMVSQD--HKVVFMDVRVPGLDGHELAVRIHEKFMKRHERPLIVALTSNADKVTKENCLRVGMEGVILKPVSVDKMRNVLSKLLEH 734          
BLAST of CX043961 vs. ExPASy Swiss-Prot
Match: ETR2_PELHO (Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = -3
Query:  266 GLQVLLADGDDMNRIVTRKLLEKLGCSVSAVSTGYECLSAMGPTAVFQLVILDLQMPELDGFEVALKIR-KFRSR-SWPLIVALTASGDEDVWEKCMQVGMNGVIRKPVLLQGIANELRRVLLH 631
            GL+VLL D + ++R VTR LL  LGC V+ VS+  E L  +     +++V +D+ MPE+DGFE+A++I  KF +R   PLIVALT + D+   + C +VGM GV+ KPV +  + N L  +L H
Sbjct:  613 GLKVLLLDDNGVSRAVTRGLLAHLGCDVTTVSSSDELLRVVSQD--YKVVFMDVCMPEVDGFEIAVRIHEKFMTRHERPLIVALTGNIDQVTKDNCTRVGMEGVVLKPVSIDKMRNVLSNLLEH 734          
BLAST of CX043961 vs. ExPASy Swiss-Prot
Match: ETR1_TOBAC (Ethylene receptor OS=Nicotiana tabacum GN=ETR1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.848e-18
Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = -3
Query:  266 RGLQVLLADGDDMNRIVTRKLLEKLGCSVSAVSTGYECLSAMGPTAVFQLVILDLQMPELDGFEVALKIR-KF-RSRSWPLIVALTASGDEDVWEKCMQVGMNGVIRKPVLLQGIANELRRVLLH 634
            +GL+VL+ D +  +R+VT+ LL  LGC V+ VS+G ECL  +  T   ++V +D+ +P +D +EVA++I  KF +  + PLIVALT + D    E CM+VGM+GVI KPV +  + + L  +L H
Sbjct:  610 QGLKVLIMDDNGFSRMVTKGLLVHLGCDVTTVSSGDECLRVL--TQEHKVVFMDVSIPGIDCYEVAVQIHEKFGKHHNRPLIVALTGNTDRVTKENCMRVGMDGVILKPVSVDKMRSVLSELLEH 732          
BLAST of CX043961 vs. ExPASy Swiss-Prot
Match: ETR1_BRAOL (Ethylene receptor 1 OS=Brassica oleracea GN=ETR1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 50/124 (40.32%), Postives = 77/124 (62.10%), Query Frame = -3
Query:  266 GLQVLLADGDDMNRIVTRKLLEKLGCSVSAVSTGYECLSAMGPTAVFQLVILDLQMPELDGFEVALKIR-KFRSRSW-PLIVALTASGDEDVWEKCMQVGMNGVIRKPVLLQGIANELRRVLLH 631
            GL+VL+ D + ++R+VT+ LL  LGC V+ VS+  ECL  +      ++V +D+  P ++ +++AL+I  KF  R   PL+VALT + D+   EKCM  G++GV+ KPV L  + N L   L H
Sbjct:  607 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE--HRVVFMDVCTPGVENYQIALRIHEKFTKRHQRPLLVALTGNTDKSTKEKCMSFGLDGVLLKPVSLDNMRNVLSDRLEH 728          
BLAST of CX043961 vs. ExPASy Swiss-Prot
Match: ETR1_SOLLC (Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = -3
Query:  266 RGLQVLLADGDDMNRIVTRKLLEKLGCSVSAVSTGYECLSAMGPTAVFQLVILDLQMPELDGFEVALKIR-KFRSRSW-PLIVALTASGDEDVWEKCMQVGMNGVIRKPVLLQGIANELRRVLLH 634
            +GL+VL+ D + ++R+VT+ LL  LGC V+ V +  ECL  +  T   ++VI+D+ M  +D +EVA+ I  +F  R   PLIVALT + D    E CM+VGM+GVI KPV +  + + L  +L H
Sbjct:  626 QGLKVLVMDENGVSRMVTKGLLTHLGCDVTTVGSRDECLRVV--THEHKVVIMDVSMQGIDCYEVAVVIHERFGKRHGRPLIVALTGNTDRVTKENCMRVGMDGVILKPVSVYKMRSVLSELLEH 748          
BLAST of CX043961 vs. ExPASy Swiss-Prot
Match: ETR1_PASED (Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = -3
Query:  266 GLQVLLADGDDMNRIVTRKLLEKLGCSVSAVSTGYECLSAMGPTAVFQLVILDLQMPELDGFEVALKIR-KFRSR-SWPLIVALTASGDEDVWEKCMQVGMNGVIRKPVLLQGIANELRRVLLH 631
            GL+VLL D + ++R+VT+ LL  LGC V+ V +  EC+         ++V +D+ MPE  GFE A+++  KF  R   PL+VALTAS D    E CM+VGM+G I KPV +  + + L  +L H
Sbjct:  613 GLKVLLMDDNGVSRMVTKGLLLHLGCDVTTVGSSEECIRVASQD--HRVVFMDVGMPE--GFEAAVRLHEKFTKRHERPLVVALTASTDRMTKENCMRVGMDGAILKPVSVDKMRSVLSDLLEH 732          
BLAST of CX043961 vs. ExPASy Swiss-Prot
Match: ETR1_MALDO (Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = -3
Query:  266 GLQVLLADGDDMNRIVTRKLLEKLGCSVSAVSTGYECLSAMGPTAVFQLVILDLQMPELDGFEVALKIR-KFRSR-SWPLIVALTASGDEDVWEKCMQVGMNGVIRKPVLLQGIANELRRVLLH 631
            GL+VL+ D + ++R VT+ LL  LGC V+AVS   E L  +      ++V +D+ MP +DG+E+A++I  KF  R   P++VALT S D+   E CM+VG++GVI KPV +  + + L  +L H
Sbjct:  613 GLKVLVMDDNGVSRSVTKGLLAHLGCDVTAVSLIDELLHVISQE--HKVVFMDVSMPGIDGYELAVRIHEKFTKRHERPVLVALTGSIDKITKENCMRVGVDGVILKPVSVDKMRSVLSELLEH 734          
BLAST of CX043961 vs. ExPASy Swiss-Prot
Match: ETR1_ARATH (Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.728e-15
Identity = 48/123 (39.02%), Postives = 78/123 (63.41%), Query Frame = -3
Query:  272 GLQVLLADGDDMNRIVTRKLLEKLGCSVSAVSTGYECLSAMGPTAVFQLVILDLQMPELDGFEVALKIR-KFRSRSW--PLIVALTASGDEDVWEKCMQVGMNGVIRKPVLLQGIANELRRVL 631
            GL+VL+ D + ++R+VT+ LL  LGC V+ VS+  ECL  +      ++V +D+ MP ++ +++AL+I  KF  +    PL+VAL+ + D+   EKCM  G++GV+ KPV L  I + L  +L
Sbjct:  609 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE--HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLL 729          
The following BLAST results are available for this feature:
BLAST of CX043961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
EIN4_ARATH1.603e-4556.47Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 ... [more]
ETR2_ARATH7.953e-4553.63Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR... [more]
ETR1_PELHO5.740e-1944.35Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR... [more]
ETR2_PELHO9.790e-1944.35Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR... [more]
ETR1_TOBAC2.848e-1843.20Ethylene receptor OS=Nicotiana tabacum GN=ETR1 PE=... [more]
ETR1_BRAOL3.482e-1640.32Ethylene receptor 1 OS=Brassica oleracea GN=ETR1 P... [more]
ETR1_SOLLC5.939e-1642.40Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR... [more]
ETR1_PASED5.939e-1642.74Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=... [more]
ETR1_MALDO5.939e-1641.94Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 ... [more]
ETR1_ARATH1.728e-1539.02Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14E07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E07-J14-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043961 ID=CX043961; Name=CX043961; organism=Citrus sinensis; type=EST; length=765bp
TTGATTTTATGTGATTCCAACTAAAACTACCATCTATGCAGCATTTAAAA
AAGGGTTCAACAACATCAAAGAAAAAGGAGCGAGCTAAACTTGTATACCA
TTTTGACTATCAATGTTGTGTATGTAACATCTCTATGCTGGAAACTCGGC
GGGGGATAGGGGGGGGGACAAAATTCGGATGGGACGTTGTCTGCTTATTT
CATTGAGATCTCCAAAGATGATTCCATGGTTGCTGAGATTCTGTTACTTA
CACAACTTTGTTTGCATGCAGCAGGACTCTTCGAAGCTCGTTGGCAATAC
CTTGCAACAGAACTGGTTTTCGGATAACACCGTTCATTCCAACCTGCATG
CACTTTTCCCACACATCTTCGTCACCACTTGCAGTCAAGGCCACAATCAA
TGGCCAACTACGACTCCTGAATTTCCGTATTTTCAATGCAACTTCGAACC
CATCCAACTCAGGCATCTGAAGATCCAAAATAACCAATTGGAAAACAGCT
GTTGGACCCATGGCACTAAGGCATTCATATCCAGTTGAAACGGCAGAAAC
ACTGCAACCTAACTTCTCAAGAAGCTTCCGAGTCACAATCCTATTCATGT
CATCACCGTCAGCTAATAAAACTTGCAAGCCTCTCAAGAGAGAATTGGAA
TGTGAGTACTCCGAAGATTCTCCAGATTCAGATATGGGTATAGCAACGGA
TGGGCGAAGTTGAAATCGAAGAACAAGTCCCATGCTCTGAGCAAAGCCAT
GAGAACTGGGGACCA
back to top