CX043960

Overview
NameCX043960
Unique NameCX043960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043960_ssr499 microsatellite CX043960_ssr499:499..510. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 75/89 (84.27%), Postives = 78/89 (87.64%), Query Frame = -3
Query:  195 QEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 449
            QEEDKKP D  AHIN K    DGNEVFFRIKRSTQLKKLMNAYCDRQ V++NSIAFLFDGRR R EQTPDEL+MEDGDEIDAMLHQTGG
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.511e-34
Identity = 75/93 (80.65%), Postives = 78/93 (83.87%), Query Frame = -3
Query:  189 EEDKKP---NDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGGML 446
            EEDKKP       AHIN K    DGNEVFFRIKRSTQLKKLMNAYCDRQ V++N+IAFLFDGRR RGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = -3
Query:  195 SVRDEAEERMSGVTNTPQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 500
            ++ D  +  ++  T    ++D KP+ +  HIN K    D NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R R +QTP EL+MEDGD+I+A+L Q GG
Sbjct:    8 NISDADKSAITPTTGDTSQQDVKPSTE--HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 46/91 (50.55%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  192 PQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGGM 452
            P+E  K  ND   HIN K    DG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+      TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 46/91 (50.55%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  192 PQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGGM 452
            P+E  K  ND   HIN K    DG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+      TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO3_CHICK (Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 45/91 (49.45%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  192 PQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGGM 452
            P+E  K  ND   HIN K    DG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+      TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGGL 93          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO3_HUMAN (Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 45/91 (49.45%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  192 PQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGGM 452
            P+E  K  ND   HIN K    DG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+      TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO3_RAT (Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  195 PQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 452
            P+E  K  ND   HIN K    DG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+      TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  195 PQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 452
            P+E  K  ND   HIN K    DG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+      TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  195 PQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 452
            P+E  K  ND   HIN K    DG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+      TP +LEMED D ID    QTGG
Sbjct:    6 PREGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
The following BLAST results are available for this feature:
BLAST of CX043960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ARATH2.683e-3684.27Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ2.511e-3480.65Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
PMT3_SCHPO4.598e-2046.23Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_XENTR4.453e-1550.55Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA4.453e-1550.55Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO3_CHICK9.921e-1549.45Small ubiquitin-related modifier 3 OS=Gallus gallu... [more]
SUMO3_HUMAN1.296e-1449.45Small ubiquitin-related modifier 3 OS=Homo sapiens... [more]
SUMO3_RAT1.692e-1450.00Small ubiquitin-related modifier 3 OS=Rattus norve... [more]
SUMO3_MOUSE1.692e-1450.00Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SUMO3_DANRE1.692e-1450.00Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E07-J14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043960 ID=CX043960; Name=CX043960; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTCTTTTTTCTTTTTTCTGGAAAAAAGAGCTACAT
ACTTAGGTAACACAAACATAATGGTGTAAATCACAAATACACAATCTTGA
GCCTCTGCATAACTTACATCCATCCATTAATAGTTTTACATTAATACTAC
TAATAAGCTCTCAAACGAGTATTACATAATTAAAACATCAGCATTCCTCC
GGTTTGGTGCAGCATGGCATCAATCTCATCACCATCTTCCATTTCCAGCT
CATCAGGGGTTTGCTCTCCTCGAAAACGGCGACCATCAAACAAAAAGGCA
ATTGAGTTCAGCTCCACAAATTGTCTATCACAGTATGCATTCATAAGCTT
CTTTAGTTGGGTGCTTCGTTTGATCCTGAAAAAAACCTCATTCCCATCTT
TGAAATTGATGTGAGCCGATTGATCGTTGGGCTTCTTATCTTCCTCTTGA
GGAGTGTTCGTGACGCCTGACATTCTCTCTTCTGCTTCGTCTCTCACACT
CTCTCTCTCTCGCTATCTCTTGGTTGGGAGCCTGTTGAATTGCAACAGTA
AAAAAGGGACTGTATTGTTTCGAGTTGTCTCAAAAAATGGAAGTCAGGAT
AGGAATGATAAAAAATGGGCAACCTGGAGGCAAAGCTCAGTTGACGGGAA
TGTATATATCAAATTTGAAATTCTGCTGAACGAGGGTGGTTCTCAACCAA
AGGTCTCAACATCAGCGG
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