DC900472

Overview
NameDC900472
Unique NameDC900472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length253
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13335 contig Csv1_Contig13335:104..356. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900472 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.885e-39
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 3
Query:    3 ANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIXRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVA 242
            ANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMI RTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVA
Sbjct:  198 ANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVA 277          
BLAST of DC900472 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.583e-37
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 3
Query:    3 ANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIXRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVA 242
            ANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMI RTSNNRKL EETSTVDGWPAWLS GDRRLLQSSSVTPN VVA
Sbjct:  198 ANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLTEETSTVDGWPAWLSPGDRRLLQSSSVTPNAVVA 277          
BLAST of DC900472 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.628e-21
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 3
Query:    3 ANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTD----MMIXRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVA 242
            A+K VR  L  GQ HVEKMCSNALAMI NMTDTD    M +   +NNRKL+E+      WP WLS GDRRLLQSS+VTP+VVVA
Sbjct:  196 ADKKVRKVLLKGQKHVEKMCSNALAMICNMTDTDIANEMKLSAPANNRKLVEDNGE---WPEWLSAGDRRLLQSSTVTPDVVVA 276          
BLAST of DC900472 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.388e-19
Identity = 56/99 (56.57%), Postives = 60/99 (60.61%), Query Frame = 3
Query:    3 ANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIXR-----TSNNRKLIEE----TSTVD----------GWPAWLSTGDRRLLQSSSVTPNVVVA 242
            A+K VR AL  GQ+HVE MCSNALAMIKNMTDTD+         TSNNRKL EE    T  VD          GWP WLS GDRRLLQ S V  +  VA
Sbjct:  187 ADKQVRKALLKGQIHVEHMCSNALAMIKNMTDTDIANFEQKAKITSNNRKLKEENQETTVAVDIAGAGELDSEGWPTWLSAGDRRLLQGSGVKADATVA 285          
BLAST of DC900472 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.808e-18
Identity = 50/91 (54.95%), Postives = 59/91 (64.84%), Query Frame = 3
Query:    3 ANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDM---------MIXRTSNNRKLIEETSTV--DGWPAWLSTGDRRLLQSSSVTPNVVVA 242
            A++ VR AL  GQVHVE MCSNALAMIKNMT+TD+              +NNRKL E T  +  DGWP WLS GDRRLLQ S++  +  VA
Sbjct:  190 ADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFELRDKSSTFTNNNNRKLKEVTGDLDSDGWPKWLSVGDRRLLQGSTIKADATVA 280          
The following BLAST results are available for this feature:
BLAST of DC900472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PME3_CITSI2.885e-3998.75Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI1.583e-3795.00Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC4.628e-2164.29Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME3_ARATH7.388e-1956.57Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH2.808e-1854.95Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
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Properties
Property NameValue
Genbank descriptionDC900472 VSS Citrus sinensis cDNA clone VSSN018 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900472 ID=DC900472; Name=DC900472; organism=Citrus sinensis; type=EST; length=253bp
ATGCTAATAAGCACGTNCGGGATGCNTTGTCAGACGGCCAGGTTCATGTT
GAGAAGATGTGTAGCAATGCGCTTGCTATGATCAAGAACATGACTGACAC
TGACATGATGATCATNAGGACTTCAAACAACAGGAAGCTGATAGAGGAGA
CCAGTACGGTTGATGGGTGGCCGGCGTGGCTGTCCACCGGAGACAGGAGG
CTGTTGCAGTCCTCGTCGGTGACACCGAACGTGGTGGTGGCACAGATGGC
AGC
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