CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_PARUW (Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 9.323e-27 Identity = 63/161 (39.13%), Postives = 102/161 (63.35%), Query Frame = -2 Query: 390 AKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 872 AKV+AN+P++++T ++ +++ +FS + +++QEE A R+ + S+Y IF+NFYS+P Y F V R F+P PKVD+A+V +LK+ P + FF + +AF +RKMLR SL+ L +I AL +G +RPE L+L+DF+KL++ Sbjct: 120 AKVIANLPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPGQ-SDYSSFTIFLNFYSKPRYGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKITRTAFEQRRKMLRASLKSLFDPSKISNALEIIGQNPQARPEVLSLEDFIKLYH 276
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLPN (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia pneumoniae GN=rsmA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.452e-20 Identity = 56/163 (34.36%), Postives = 102/163 (62.58%), Query Frame = -2 Query: 396 GFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 878 G +VVAN+P++I+T ++ +L L D + V +++Q+E A R+V +P R +Y + IF+ F+++ Y FKV + F+P+P+V +AV+ K+K+ + FF++ +AF +RK+L +L+ L ++E+AL ++GL RPE L+L+D++ L Sbjct: 111 GKGRVVANLPYHITTPLLTKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGR--DYGSLTIFLQFFADIHYAFKVSASCFYPKPQVQSAVIHMKVKETLPL-SDEEIPVFFTLTRTAFQQRRKVLANTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDYLAL 270
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLFF (Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila felis (strain Fe/C-56) GN=rsmA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.195e-19 Identity = 57/168 (33.93%), Postives = 101/168 (60.12%), Query Frame = -2 Query: 384 GFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 878 G +VVAN+P++I+T ++ +L L + + + + +++Q+E A R+ +P + EY + IF+ F+++ Y FKV FFP+P+V +AVV +K +P S K FFS+ +AF +RK+L +L++L + AL + +RPE L+LD+++KL L+ Sbjct: 117 GKGRVVANLPYHITTPLLTKLFLEVPNQWKTITVMMQDEVARRITAQPGGK--EYGSLTIFLQFFADVRYAFKVSSGCFFPKPQVSSAVVHMTVKDT--FPLEESLHKKFFSLTRAAFGQRRKLLANALKNLYPKDLVFSALNQLNFSEKTRPETLSLDEYLKLFQLL 280
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACJO (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus johnsonii GN=rsmA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.478e-19 Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+VAN+P+ I+T +I L+ FS + L++Q+E A RLV +T EY P++I V +V T+F P+PKVD+AVV L + P + F +V F +RK L +L+ L E EK + D+GL RPEELTL+ FV+L +L+ Sbjct: 132 KIVANLPYYITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEVKSTSFMPRPKVDSAVVV--LTPLLEKPDINDYAFFDHVVKMCFAQRRKTLANNLKTLIKDKDEREKLINDLGLDVRVRPEELTLNQFVQLAHLL 291
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_SYMTH (Ribosomal RNA small subunit methyltransferase A OS=Symbiobacterium thermophilum GN=rsmA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.344e-19 Identity = 62/170 (36.47%), Postives = 100/170 (58.82%), Query Frame = -2 Query: 378 AKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK-----ALGDVGLPATSRPEELTLDDFVKLHNLIVQ 872 AKVVAN+P+ I+T ++ +LL S VV+++Q+E A R+V P + Y +++ V +Y+EP +V R +F PQP+VD+AVV+ + ++ P ++FF +V +AF G+R RKSL + TSL +EK AL G+ R E L+L++F + + Q Sbjct: 121 AKVVANLPYYITTPLVMRLLEEELPLSHVVVMVQKEVADRMVSPP-GSKAYGALSVAVQYYTEPRIVLRVSRASFMPQPEVDSAVVSLRYRERP--PVDAPPEAFFRVVRAAF-GQR---RKSLVNALTSLGVEKAAVHAALEAAGIDPGRRGESLSLEEFAAVARTLWQ 283
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLCV (Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila caviae GN=rsmA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.594e-18 Identity = 56/168 (33.33%), Postives = 103/168 (61.31%), Query Frame = -2 Query: 384 GFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 878 G +VVAN+P++I+T ++ +L L + + + V +++Q+E A R+ +P + EY + IF+ F+++ Y FKV FFP+P+V +AVV +K+ +P TS + FFS+ +AF +RK+L +L+ L + AL + +RPE L+L+++++L +L+ Sbjct: 111 GKGRVVANLPYHITTPLLTKLFLEVPNQWKTVTVMMQDEVARRITAQPGGK--EYGSLTIFLQFFADVRYAFKVSPGCFFPKPQVSSAVVHMTVKET--FPLETSLHQKFFSLTRAAFGQRRKLLANALKDLYPKELVFSALNQLNFSEKTRPETLSLNEYLQLFHLL 274
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MYCA5 (Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma arthritidis (strain 158L3-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.719e-18 Identity = 52/162 (32.10%), Postives = 90/162 (55.56%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 V+ NIP+NI+++++ +L+ I + L++Q+E A RLV +T EY + + VNF + F V +NF P PKVD+A++T ++ Y + K + + F KRKML +L ++ A+ +G T+R EEL+L + +KL+ ++V Sbjct: 97 VIGNIPYNITSEILFKLIENHSILKKATLMVQDEVANRLVAMP-KTKEYSKLTVSVNFVGNVKKHFVVKASNFNPAPKVDSAIITIDFYKSLPY----NLKKVLAFIKQIFAFKRKMLINNLVPQWPKADVIWAIEQIGHKQTTRAEELSLQEIMKLYEILV 253
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLAB (Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila abortus GN=rsmA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.638e-18 Identity = 57/167 (34.13%), Postives = 97/167 (58.08%), Query Frame = -2 Query: 384 GFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 878 G +VVAN+P++I+T ++++L L + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV F P+P+V +AVV +K+ TK FFS+ +AF +RK+L +L+ L + +AL + +RPE L+LDD++KL L+ Sbjct: 111 GKGRVVANLPYHITTPLLRKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVSPGCFLPKPQVASAVVHMTVKENFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKERVFEALSQLHFSDKTRPETLSLDDYLKLFYLL 274
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACLA (Ribosomal RNA small subunit methyltransferase A OS=Lactococcus lactis subsp. lactis GN=rsmA PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.349e-17 Identity = 58/166 (34.94%), Postives = 92/166 (55.42%), Query Frame = -2 Query: 381 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 869 KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ S +T Y ++I V +Y E F VPRT F P P VD+A++ ++A V + FF + S+F +RK L +LQ + EIEK L + T R E L++++F KL + ++ Sbjct: 127 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRIAA-SPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIPAPNVDSAILKMVRREA-PLVEVEDEEWFFKTMHSSFVHRRKTLMNNLQAAFGKESKPEIEKLLAQAEISPTIRGEALSIEEFAKLADALL 290
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MYCCT (Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rsmA PE=3 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17 Identity = 49/165 (29.70%), Postives = 93/165 (56.36%), Query Frame = -2 Query: 384 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 866 +++N P+ I+++++ + L + D+ ++ V +LQ+E ALR+ + + Y ++I FYS+ ++F V + F+P PKVD+A+++ + K F V + FN KRK + +L ++ +LE K L + + RPE+L +D+++KL NLI Sbjct: 102 IISNTPYYITSEILFKTLQISDLLTKAVFMLQKEVALRICS-NKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPIPKVDSAIISLTFNNIYK-KQINDDKKFIEFVRTLFNNKRKTILNNLNNIIQNKNKALEYLKML---NISSNLRPEQLDIDEYIKLFNLI 261 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |