CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_PARUW (Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 9.323e-27
Identity = 63/161 (39.13%), Postives = 102/161 (63.35%), Query Frame = -2
Query:  390 AKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 872
            AKV+AN+P++++T ++ +++    +FS + +++QEE A R+     + S+Y    IF+NFYS+P Y F V R  F+P PKVD+A+V  +LK+    P     + FF +  +AF  +RKMLR SL+ L    +I  AL  +G    +RPE L+L+DF+KL++
Sbjct:  120 AKVIANLPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPGQ-SDYSSFTIFLNFYSKPRYGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKITRTAFEQRRKMLRASLKSLFDPSKISNALEIIGQNPQARPEVLSLEDFIKLYH 276          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLPN (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia pneumoniae GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.452e-20
Identity = 56/163 (34.36%), Postives = 102/163 (62.58%), Query Frame = -2
Query:  396 GFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 878
            G  +VVAN+P++I+T ++ +L L   D +  V +++Q+E A R+V +P  R  +Y  + IF+ F+++  Y FKV  + F+P+P+V +AV+  K+K+     +      FF++  +AF  +RK+L  +L+ L    ++E+AL ++GL    RPE L+L+D++ L
Sbjct:  111 GKGRVVANLPYHITTPLLTKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGR--DYGSLTIFLQFFADIHYAFKVSASCFYPKPQVQSAVIHMKVKETLPL-SDEEIPVFFTLTRTAFQQRRKVLANTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDYLAL 270          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLFF (Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila felis (strain Fe/C-56) GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.195e-19
Identity = 57/168 (33.93%), Postives = 101/168 (60.12%), Query Frame = -2
Query:  384 GFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 878
            G  +VVAN+P++I+T ++ +L L + + +  + +++Q+E A R+  +P  +  EY  + IF+ F+++  Y FKV    FFP+P+V +AVV   +K    +P   S  K FFS+  +AF  +RK+L  +L++L     +  AL  +     +RPE L+LD+++KL  L+
Sbjct:  117 GKGRVVANLPYHITTPLLTKLFLEVPNQWKTITVMMQDEVARRITAQPGGK--EYGSLTIFLQFFADVRYAFKVSSGCFFPKPQVSSAVVHMTVKDT--FPLEESLHKKFFSLTRAAFGQRRKLLANALKNLYPKDLVFSALNQLNFSEKTRPETLSLDEYLKLFQLL 280          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACJO (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus johnsonii GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.478e-19
Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ I+T +I  L+     FS + L++Q+E A RLV    +T EY P++I V          +V  T+F P+PKVD+AVV   L    + P +     F  +V   F  +RK L  +L+ L     E EK + D+GL    RPEELTL+ FV+L +L+
Sbjct:  132 KIVANLPYYITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEVKSTSFMPRPKVDSAVVV--LTPLLEKPDINDYAFFDHVVKMCFAQRRKTLANNLKTLIKDKDEREKLINDLGLDVRVRPEELTLNQFVQLAHLL 291          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_SYMTH (Ribosomal RNA small subunit methyltransferase A OS=Symbiobacterium thermophilum GN=rsmA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.344e-19
Identity = 62/170 (36.47%), Postives = 100/170 (58.82%), Query Frame = -2
Query:  378 AKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK-----ALGDVGLPATSRPEELTLDDFVKLHNLIVQ 872
            AKVVAN+P+ I+T ++ +LL      S VV+++Q+E A R+V P   +  Y  +++ V +Y+EP    +V R +F PQP+VD+AVV+ + ++    P     ++FF +V +AF G+R   RKSL +  TSL +EK     AL   G+    R E L+L++F  +   + Q
Sbjct:  121 AKVVANLPYYITTPLVMRLLEEELPLSHVVVMVQKEVADRMVSPP-GSKAYGALSVAVQYYTEPRIVLRVSRASFMPQPEVDSAVVSLRYRERP--PVDAPPEAFFRVVRAAF-GQR---RKSLVNALTSLGVEKAAVHAALEAAGIDPGRRGESLSLEEFAAVARTLWQ 283          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLCV (Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila caviae GN=rsmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.594e-18
Identity = 56/168 (33.33%), Postives = 103/168 (61.31%), Query Frame = -2
Query:  384 GFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 878
            G  +VVAN+P++I+T ++ +L L + + +  V +++Q+E A R+  +P  +  EY  + IF+ F+++  Y FKV    FFP+P+V +AVV   +K+   +P  TS  + FFS+  +AF  +RK+L  +L+ L     +  AL  +     +RPE L+L+++++L +L+
Sbjct:  111 GKGRVVANLPYHITTPLLTKLFLEVPNQWKTVTVMMQDEVARRITAQPGGK--EYGSLTIFLQFFADVRYAFKVSPGCFFPKPQVSSAVVHMTVKET--FPLETSLHQKFFSLTRAAFGQRRKLLANALKDLYPKELVFSALNQLNFSEKTRPETLSLNEYLQLFHLL 274          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MYCA5 (Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma arthritidis (strain 158L3-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.719e-18
Identity = 52/162 (32.10%), Postives = 90/162 (55.56%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            V+ NIP+NI+++++ +L+    I  +  L++Q+E A RLV    +T EY  + + VNF    +  F V  +NF P PKVD+A++T    ++  Y    + K   + +   F  KRKML  +L       ++  A+  +G   T+R EEL+L + +KL+ ++V
Sbjct:   97 VIGNIPYNITSEILFKLIENHSILKKATLMVQDEVANRLVAMP-KTKEYSKLTVSVNFVGNVKKHFVVKASNFNPAPKVDSAIITIDFYKSLPY----NLKKVLAFIKQIFAFKRKMLINNLVPQWPKADVIWAIEQIGHKQTTRAEELSLQEIMKLYEILV 253          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLAB (Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila abortus GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.638e-18
Identity = 57/167 (34.13%), Postives = 97/167 (58.08%), Query Frame = -2
Query:  384 GFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 878
            G  +VVAN+P++I+T ++++L L   + +  V +++Q+E A R+  +P     EY  + IF+ F+ +  Y FKV    F P+P+V +AVV   +K+         TK FFS+  +AF  +RK+L  +L+ L     + +AL  +     +RPE L+LDD++KL  L+
Sbjct:  111 GKGRVVANLPYHITTPLLRKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVSPGCFLPKPQVASAVVHMTVKENFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKERVFEALSQLHFSDKTRPETLSLDDYLKLFYLL 274          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACLA (Ribosomal RNA small subunit methyltransferase A OS=Lactococcus lactis subsp. lactis GN=rsmA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.349e-17
Identity = 58/166 (34.94%), Postives = 92/166 (55.42%), Query Frame = -2
Query:  381 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 869
            KVVAN+P+ I+T ++  L+     FSE V+++Q+E A R+   S +T  Y  ++I V +Y E    F VPRT F P P VD+A++    ++A     V   + FF  + S+F  +RK L  +LQ      +  EIEK L    +  T R E L++++F KL + ++
Sbjct:  127 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRIAA-SPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIPAPNVDSAILKMVRREA-PLVEVEDEEWFFKTMHSSFVHRRKTLMNNLQAAFGKESKPEIEKLLAQAEISPTIRGEALSIEEFAKLADALL 290          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MYCCT (Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rsmA PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17
Identity = 49/165 (29.70%), Postives = 93/165 (56.36%), Query Frame = -2
Query:  384 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 866
            +++N P+ I+++++ + L + D+ ++ V +LQ+E ALR+   +   + Y  ++I   FYS+  ++F V +  F+P PKVD+A+++           +   K F   V + FN KRK +  +L ++      +LE  K L    + +  RPE+L +D+++KL NLI
Sbjct:  102 IISNTPYYITSEILFKTLQISDLLTKAVFMLQKEVALRICS-NKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPIPKVDSAIISLTFNNIYK-KQINDDKKFIEFVRTLFNNKRKTILNNLNNIIQNKNKALEYLKML---NISSNLRPEQLDIDEYIKLFNLI 261          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_PARUW9.323e-2739.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLPN8.452e-2034.36Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLFF4.195e-1933.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACJO5.478e-1938.04Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SYMTH9.344e-1936.47Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLCV1.594e-1833.33Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MYCA52.719e-1832.10Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLAB4.638e-1834.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACLA1.349e-1734.94Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MYCCT1.762e-1729.70Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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