CX043890

Overview
NameCX043890
Unique NameCX043890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6033 contig Csv1_Contig6033:1219..1898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043890 vs. ExPASy Swiss-Prot
Match: GP107_MOUSE (Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.013e-30
Identity = 55/101 (54.46%), Postives = 79/101 (78.22%), Query Frame = -3
Query:  376 LVDVVCCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYGLETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 678
            LVD++CC A+LFP+VWSI++L+EA+ TDGKAA+NL KL LFR YY++++CYIYFTR++ + L+    +++ W   +  E ATL F+V TGYKF+P + NPY
Sbjct:  405 LVDLLCCGAILFPVVWSIRHLQEASATDGKAAINLAKLRLFRHYYVLIVCYIYFTRIIAFLLKFAVPFQWKWLYQLLDETATLVFFVLTGYKFRPASDNPY 505          
BLAST of CX043890 vs. ExPASy Swiss-Prot
Match: GP108_HUMAN (Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 55/101 (54.46%), Postives = 78/101 (77.23%), Query Frame = -3
Query:  376 LVDVVCCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYGLETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 678
            LVD++CC A+LFP+VWSI++L++A+ TDGK AVNL KL LFR YY++VICY+YFTR++   L+    +++ W   +  E +TLAF+V TGYKF+P  +NPY
Sbjct:  404 LVDLICCGAILFPVVWSIRHLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVEGSTLAFFVLTGYKFQPTGNNPY 504          
BLAST of CX043890 vs. ExPASy Swiss-Prot
Match: GP108_MOUSE (Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.797e-29
Identity = 55/101 (54.46%), Postives = 77/101 (76.24%), Query Frame = -3
Query:  376 LVDVVCCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYGLETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 678
            LVD++CC A+LFP+VWSI++L++A+ TDGK AVNL +L LFR YY++VICYIYFTR++   L+    +++ W   +  E +TLAF+V TGYKF+P   NPY
Sbjct:  430 LVDLICCGAILFPVVWSIRHLQDASGTDGKVAVNLARLKLFRHYYVMVICYIYFTRIIAILLQVAVPFQWQWLYQLLVESSTLAFFVLTGYKFQPAGDNPY 530          
BLAST of CX043890 vs. ExPASy Swiss-Prot
Match: GP108_RAT (Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.476e-29
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = -3
Query:  376 LVDVVCCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYGLETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 678
            LVD++CC A+LFP+VWSI++L++A+ TDGK A+NL KL LFR YY++VICYIYFTR++   L     +++ W   +  E +TLAF+V TGYKF+P   NPY
Sbjct:  437 LVDLICCGAILFPVVWSIRHLQDASGTDGKVAMNLAKLKLFRHYYVMVICYIYFTRIIAILLRVAVPFQWQWLYQLLVESSTLAFFVLTGYKFQPAGDNPY 537          
BLAST of CX043890 vs. ExPASy Swiss-Prot
Match: GP108_BOVIN (Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.476e-29
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = -3
Query:  376 LVDVVCCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYGLETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 678
            LVD++CC  +LFP+VWSI++L++A+ TDGK AVNL KL LFR YY++VICYIYFTR++   L  +  +++ W   +  E +TLAF+V TGYKF+P   NPY
Sbjct:  409 LVDLICCGTILFPVVWSIRHLQDASGTDGKVAVNLAKLKLFRHYYVMVICYIYFTRIIAILLRAVVPFQWQWLYQLLVEGSTLAFFVLTGYKFQPARDNPY 509          
BLAST of CX043890 vs. ExPASy Swiss-Prot
Match: GP107_HUMAN (Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.070e-23
Identity = 55/149 (36.91%), Postives = 79/149 (53.02%), Query Frame = -3
Query:  376 LVDVVCCCAVLFPIVWSIKNLREAARTDGK------------------------------------------------AAVNLMKLTLFRQYYIVVICYIYFTRVVVYGLETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 678
            LVD++CC A+LFP+VWSI++L+EA+ TDGK                                                AA+NL KL LFR YY++++CYIYFTR++ + L+    +++ W   +  E ATL F+V TGYKF+P + NPY
Sbjct:  406 LVDLLCCGAILFPVVWSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIESHHFAQADLELLASSCPPASVSQRAGITAAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFVLTGYKFRPASDNPY 554          
The following BLAST results are available for this feature:
BLAST of CX043890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GP107_MOUSE2.013e-3054.46Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2[more]
GP108_HUMAN2.226e-2954.46Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2[more]
GP108_MOUSE3.797e-2954.46Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1[more]
GP108_RAT6.476e-2954.46Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2... [more]
GP108_BOVIN6.476e-2954.46Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1[more]
GP107_HUMAN1.070e-2336.91Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14A12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A12-B24-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043890 ID=CX043890; Name=CX043890; organism=Citrus sinensis; type=EST; length=680bp
TTTTTCACCATCAGAATAACTATGTGCTGCATATATTTTATTTCTTTCTT
CAAGGCTATGAAATGTCTAGTTTTTCATTTGATTACACATCATCCACATT
AGATAATTTGAAATAAAAGCACAATCATTTCTCAAAAAGAAATTCAAATA
TCATGTATGAGTATTACATGTACTATAAGATTCACAGACATACATCAAAG
TTGAAAAAAGTAACCTACTAATTCCACCAGACAAAAACGACCCAATATGA
GTAGGCAAGATTTCTACCTCGAGTCTCCTACTCTCCCATTTGGATGGTGT
CAATCACAATTCAAACTCCTCTTCAAGCTTCAATGCCTCAGCAGCAGCCT
CTTCCTCCTCATCATCAATCACAAAGTACGGATTATGTGCCTCGGGCTTA
AACTTGTAACCGGTGAACACATAAAATGCCAGCGTGGCCAATTCTCCAGC
CACCACGCTTGTCCACAGATACTTGTAGGAAGTAATAGTCTCAAGTCCAT
AGACCACCACCCGAGTAAAGTAAATGTAGCAGATAACCACAATATAGTAC
TGCCTGAACAATGTGAGCTTCATCAAATTAACTGCAGCTTTGCCGTCAGT
CCTGGCAGCCTCACGCAGGTTCTTGATCGACCAAACGATGGGGAACAAAA
CGGCACAGCAACACACAACATCCACAAGCA
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