CX043877

Overview
NameCX043877
Unique NameCX043877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043877_ssr398 microsatellite CX043877_ssr398:398..409. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX043877 vs. ExPASy Swiss-Prot
Match: SIL10_ARATH (E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.856e-29
Identity = 48/83 (57.83%), Postives = 66/83 (79.52%), Query Frame = 1
Query:  496 QCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNF 744
            QC+NGH+AC+ CC+K+ N+CPSC  PIGY RCRA+EKV+E+ +V+C N+ YGCK + SYG +  HE++C   PCSCPI DC++
Sbjct:  126 QCDNGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEKVIEASRVSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPILDCHY 208          
BLAST of CX043877 vs. ExPASy Swiss-Prot
Match: SINL6_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.197e-27
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  430 LNCLMTYHENKSDILMHSWIAIQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNF 744
            L+C + Y   K  +        QC NGH+ACS+CC K+ NKCP+C  P+G+ RCRA+E+VLESV V CR ++ GC  T+ YG++  HEKIC   PCSCP+  CN+
Sbjct:   43 LDCPICYQALKIPVF-------QCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAMERVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPCSCPVQGCNY 140          
BLAST of CX043877 vs. ExPASy Swiss-Prot
Match: SINL7_ARATH (E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.158e-27
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 1
Query:  496 QCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNF 744
            QC+NGH+ACS+CC K+ NKCP+C +P+G+NRCRA+E VLES+ + C N+  GCK  +SYGK+  HEK C    C+CP  DCN+
Sbjct:   64 QCDNGHLACSSCCPKLNNKCPACTSPVGHNRCRAMESVLESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACPALDCNY 146          
BLAST of CX043877 vs. ExPASy Swiss-Prot
Match: SINL2_ARATH (E3 ubiquitin-protein ligase SINA-like 2 OS=Arabidopsis thaliana GN=At1g66620 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.949e-24
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  430 LNCLMTYHENKSDILMHSWIAIQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNF 744
            L+C +  H   S I        QC+NGHIACS+CC+K+ NKCPSC  PIG  R R +E+V+E+V VTC N  +GC    SYGK+  HEK C    C CP P+CN+
Sbjct:   42 LDCPICCHALTSPIF-------QCDNGHIACSSCCTKLRNKCPSCALPIGNFRSRIMERVVEAVMVTCPNVKHGCTEKFSYGKELIHEKDCRFALCYCPAPNCNY 139          
BLAST of CX043877 vs. ExPASy Swiss-Prot
Match: SINL4_ARATH (E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana GN=At1g66650 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  496 QCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKK-HDHEKICPHVPCSCPIPDCNF 744
            QC NGH+AC  CC K+  +C  C  PIG  RCRA+EKV+++  V+C N+ YGCK + +YG +   HEK+C   PCSCPI DCN+
Sbjct:   99 QCNNGHLACFLCCIKLKKRCSFCKLPIGDVRCRAMEKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPIKDCNY 182          
BLAST of CX043877 vs. ExPASy Swiss-Prot
Match: SINL9_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana GN=At5g37910 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  496 QCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNF 744
            QC+NGH+AC +CC K+ NKCP+C  P+G++R RA+E VLES+ + C N  +GC  +  YGK+  HEK C    CSCP   C++
Sbjct:   51 QCDNGHLACGSCCPKLSNKCPACTLPVGHSRSRAMESVLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCPSSVCDY 133          
BLAST of CX043877 vs. ExPASy Swiss-Prot
Match: SINL5_ARATH (E3 ubiquitin-protein ligase SINA-like 5 OS=Arabidopsis thaliana GN=At1g66660 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  496 QCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNF 744
            QC NGH+ACS+CC K+  KC  C   IG  RCRA+EKV+E+  V C N+ +GCK T +Y  +  HEK+C  V CSCP+ +CN+
Sbjct:   99 QCSNGHLACSSCCQKLNKKCSFCRCNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTTYCNQSSHEKVCKFVRCSCPVSNCNY 181          
BLAST of CX043877 vs. ExPASy Swiss-Prot
Match: SINL3_ARATH (E3 ubiquitin-protein ligase SINA-like 3 OS=Arabidopsis thaliana GN=At1g66630 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 1
Query:  412 LMYFGTLNCLMTYHENKSDILMHSWIAIQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHD--HEKICPHVPCSCPIPDCNF 744
            L+    L+C + YH+  + I        QC+NGHIACS+CC K+  KCP C   IG+ R R +EK++E+V V+C N+ YGC   + Y  + +  HE++C    C CP P+C +
Sbjct:   41 LLELDLLDCPICYHKLGAPIY-------QCDNGHIACSSCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPNAKYGCTEKIPYDNESESAHERVCEFTLCYCPEPECKY 146          
BLAST of CX043877 vs. ExPASy Swiss-Prot
Match: SIL11_ARATH (E3 ubiquitin-protein ligase SINA-like 11 OS=Arabidopsis thaliana GN=At5g62800 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  496 QCENGHIACSTCCSKIMNKCPS--CCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNF 744
            QC++GHI C+ C +K+ NKCP   C  PIG  RC A+E+VLES  V C+N+ +GC  ++SY K   HEK C +  CSCP  +CN+
Sbjct:   56 QCDDGHIVCNFCFAKVSNKCPGPGCDLPIGNKRCFAMERVLESAFVPCQNTEFGCTKSVSYEKVSSHEKECNYSQCSCPNLECNY 140          
BLAST of CX043877 vs. ExPASy Swiss-Prot
Match: SINL8_ARATH (E3 ubiquitin-protein ligase SINA-like 8 OS=Arabidopsis thaliana GN=At5g37900 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.726e-18
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  496 QCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNF 744
            QCENGH+ACS+CC K+ NKCP+C           +E +LES+ VTC N  +GC  +  YGKK  HE+ C    CSCP  DC +
Sbjct:   48 QCENGHLACSSCCPKLRNKCPAC----------PMENILESILVTCPNDMFGCTESFLYGKKSTHEEECIFSLCSCPSLDCEY 120          
The following BLAST results are available for this feature:
BLAST of CX043877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SIL10_ARATH5.856e-2957.83E3 ubiquitin-protein ligase SINA-like 10 OS=Arabid... [more]
SINL6_ARATH4.197e-2749.52Putative E3 ubiquitin-protein ligase SINA-like 6 O... [more]
SINL7_ARATH7.158e-2756.63E3 ubiquitin-protein ligase SINA-like 7 OS=Arabido... [more]
SINL2_ARATH1.949e-2449.52E3 ubiquitin-protein ligase SINA-like 2 OS=Arabido... [more]
SINL4_ARATH1.825e-2252.38E3 ubiquitin-protein ligase SINA-like 4 OS=Arabido... [more]
SINL9_ARATH3.112e-2249.40Putative E3 ubiquitin-protein ligase SINA-like 9 O... [more]
SINL5_ARATH3.112e-2251.81E3 ubiquitin-protein ligase SINA-like 5 OS=Arabido... [more]
SINL3_ARATH5.869e-2139.82E3 ubiquitin-protein ligase SINA-like 3 OS=Arabido... [more]
SIL11_ARATH8.475e-2049.41E3 ubiquitin-protein ligase SINA-like 11 OS=Arabid... [more]
SINL8_ARATH2.726e-1848.19E3 ubiquitin-protein ligase SINA-like 8 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A04-B8-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043877 ID=CX043877; Name=CX043877; organism=Citrus sinensis; type=EST; length=745bp
ATAGGCTTAAATCAAACCTGGAGACTACCATTCATTAGAGAAATTTGGTG
AAAAGGAGTTTGGAGATGGGTTAATCATTCAAGGTTCATTAGAAGTATTA
AAGAAATGGTTTAATTCGTAATTATATATCCATGTAGCTAGTTACATATT
AATGTTATCATTGCACATGTGCACACGCACAGAAACAGATTTCCATGCAT
AACTGTATATGAGGAGGGAGGAGTGTGCATGCCTGTTGTTTGGATTATTC
ACTTGCCAAAGGATATTGCATGGCTACTGAATCTCCATTTTAATAGAGAA
AATATTCATGTCCTTGAGTACCCATTTTAGTTACTGTGTCATATCCAAAA
CTGAGATAAGAGTTCACGTAAGTTAGTGCATTTTGTGCTGGCATGCATAT
TTATTTATTTTTTGATGTACTTCGGTACTCTAAATTGTCTGATGACCTAC
CATGAAAACAAATCTGATATCTTGATGCATTCTTGGATTGCAATTCAGTG
TGAAAATGGGCATATAGCTTGCTCTACCTGCTGCTCCAAAATTATGAATA
AATGTCCATCTTGTTGTACGCCTATTGGCTACAACCGTTGCAGGGCCATC
GAGAAAGTTTTAGAATCTGTTAAAGTAACATGTCGGAACTCAAATTATGG
GTGTAAAGTAACAATGAGTTATGGGAAGAAACATGATCATGAGAAGATTT
GCCCCCATGTGCCATGTTCTTGCCCCATTCCAGACTGCAACTTTG
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