CX043842

Overview
NameCX043842
Unique NameCX043842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043842 vs. ExPASy Swiss-Prot
Match: YI01_SCHPO (Putative amidase C869.01 OS=Schizosaccharomyces pombe GN=SPAC869.01 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.397e-33
Identity = 72/202 (35.64%), Postives = 100/202 (49.50%), Query Frame = 3
Query:   90 LLLGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGYVEPLPYQFDGCHL*LTKD*LPCRPICRTVADAVYVLDAIAGFDHNDPAT-SAASKYIPHGGYKQFI-KPHGLKGKRLGVVRNPFFNILKGSSLDQVFD 689
            +L G A+LSEWA+ RS++   G+ ARGGQ + P+ L+ +P             N++A +LGTETDG          VVG+KPTVGLTSR GVIP +  QD+ G                        PI RTV DAVYV  ++ G D ND  T +   K    G Y +F+     L+G R G+     +   K   +D++ +
Sbjct:  180 VLFGHATLSEWADMRSNDYSEGYSARGGQSRCPFNLTVNPGGSSSGSAISVASNMIAFALGTETDGSIIDPAMRNGVVGLKPTVGLTSRYGVIPESEHQDTTG------------------------PIARTVRDAVYVFQSMWGIDENDIYTLNQTGKTPEDGDYMKFLSNKTSLEGARFGLPWKRLWQNAKADEIDRLLE 357          

HSP 2 Score: 47.3654 bits (111), Expect = 8.397e-33
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 2
Query:   11 AGSYALLGSVVPRDAGVVTKLREAGAITAG 100
            AGSYALLGS+VPRDA VV +LREAGA+  G
Sbjct:  154 AGSYALLGSIVPRDAYVVKQLREAGAVLFG 183          
BLAST of CX043842 vs. ExPASy Swiss-Prot
Match: GATA_MICAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.244e-13
Identity = 61/198 (30.81%), Postives = 85/198 (42.93%), Query Frame = 3
Query:   90 LLLGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGYVEPLPYQFDGCHL*LTKD*LPCRPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSSLDQV 683
            +++GK +L E+A   SS   +G+        NP+ LS  P                 V+LG++T G          VVG+KPT GL SR G++      D +G                        P  RTV DA  +L AIAG+D  D    + S  +P   Y QF+K   LKG ++GV++  F     G  LDQV
Sbjct:  113 VIVGKTNLDEFA-MGSSTENSGYHVTA----NPWDLSRVPGGSSGGSAAAVAAQECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRFGLVAYASSLDQIG------------------------PFGRTVEDAAILLQAIAGYDPQD----STSLNLPIPDYSQFLKT-SLKGLKIGVIKETF-----GEGLDQV 271          

HSP 2 Score: 23.483 bits (49), Expect = 2.244e-13
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 2
Query:   38 VVPRDAGVVTKLREAGAITAGK 103
            V P ++ V  KLR+ GA+  GK
Sbjct:   96 VPPYESTVTQKLRDLGAVIVGK 117          
BLAST of CX043842 vs. ExPASy Swiss-Prot
Match: GATA_CYAA5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain ATCC 51142) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 63/213 (29.58%), Postives = 87/213 (40.85%), Query Frame = 3
Query:   90 LLLGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGYVEPLPYQFDGCHL*LTKD*LPCRPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSSLDQVFD-------HHLQTL 707
            +++GK +L E+A   SS   +G+        NP+ LS  P             +   V+LG++T G          VVG+KPT GL SR G++      D +G                        P  R V DA  +L AIAG+D  D    + S   P   Y QF+KP  L+G  +GV+   F     G  LD V          HL+TL
Sbjct:  113 VMVGKTNLDEFA-MGSSTENSGYQVTA----NPWDLSRVPGGSSGGSAAAVAASECVVALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYASSLDQIG------------------------PFARNVQDAAILLGAIAGYDPKD----STSINTPVPDYTQFLKP-SLEGLTIGVIEETF-----GEGLDPVVSKTVKAAIDHLKTL 286          
The following BLAST results are available for this feature:
BLAST of CX043842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YI01_SCHPO8.397e-3335.64Putative amidase C869.01 OS=Schizosaccharomyces po... [more]
GATA_MICAN2.244e-1330.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CYAA56.424e-1129.58Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13G06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13G06-N11-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043842 ID=CX043842; Name=CX043842; organism=Citrus sinensis; type=EST; length=819bp
GGCCCCCCCTGCTGGCTCGTATGCTCTGCTCGGCTCAGTCGTGCCCCGGG
ATGCTGGTGTGGTGACCAAATTGAGGGAAGCTGGTGCCATTACTGCTGGG
AAAGGCTAGCTTGAGTGAGTGGGCTAATTTTAGATCCTCAAATGCACCCA
ATGGTTTTTGTGCTAGGGGTGGCCAAGGAAAGAATCCATATGTTCTATCA
GCAGATCCCTGGGGGTCGAGCAGTGGCTCAGCAATATCGGTAGCAGCCAA
CTTGGTTGCAGTGTCACTGGGAACTGAAACTGATGGTTCAATTCTCTCTC
CTTCCAGTTCCAACTCAGTAGTGGGAATCAAACCAACCGTTGGTCTCACC
AGCAGAGCCGGAGTCATCCCTTTAACTCCTAGACAGGACTCCGTTGGGTA
TGTGGAACCTTTGCCATATCAATTTGATGGCTGTCACCTTTAATTGACAA
AGGACTAGTTGCCCTGTAGGCCTATTTGCAGAACTGTAGCGGATGCCGTT
TATGTTCTTGACGCTATTGCAGGATTTGATCACAATGATCCAGCAACCAG
CGCTGCATCTAAATATATTCCACATGGTGGCTACAAACAATTTATTAAGC
CTCACGGACTCAAAGGAAAGAGATTGGGAGTGGTAAGGAATCCATTTTTC
AATATTCTCAAGGGCTCTTCACTGGATCAAGTTTTTGATCACCATCTGCA
GACACTCAGGTTGAATTACTTTAAACCATGAAAATCTCTGCATGTTATAA
AATGCATACAAGTATTTATTCTAGGTTAGGAAGCTTAATTAGCCTGATGA
ATGGTTGGAAAATGCAGTA
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